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Feature/1941 computation tests #1961

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Feature/1941 computation tests #1961

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76f7140
add test for msr-fsl computation
kalitopix Aug 9, 2024
7955700
add computations
kalitopix Aug 12, 2024
ca7d16d
add test for msr-csv computation
kalitopix Aug 21, 2024
a065973
add test for regression-csv computation
kalitopix Aug 22, 2024
b793322
add test for regression-vbm computation
kalitopix Aug 26, 2024
af08232
reorganize folder structure
kalitopix Aug 26, 2024
e8153e8
add test for regression-fsl computation
kalitopix Aug 27, 2024
dc60d52
add test for dpsvm-csv computation
kalitopix Aug 27, 2024
fd22639
Merge branch 'master' into feature/1941-computation-tests
kalitopix Sep 10, 2024
41852fe
Merge branch 'master' into feature/1941-computation-tests
rssk Nov 14, 2024
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74 changes: 74 additions & 0 deletions ...m-development/test-data/dpsvm-csv-test-data/input/local0/simulatorRun/site1_Covariate.csv
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Original file line number Diff line number Diff line change
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freesurferfile,isControl,age
subject0_aseg_stats.txt,False,22.0
subject1_aseg_stats.txt,True,47.0
subject2_aseg_stats.txt,False,56.0
subject3_aseg_stats.txt,True,73.0
subject4_aseg_stats.txt,False,58.0
subject5_aseg_stats.txt,False,67.0
subject6_aseg_stats.txt,False,40.0
subject7_aseg_stats.txt,True,25.0
subject8_aseg_stats.txt,True,51.0
subject9_aseg_stats.txt,False,37.0
subject10_aseg_stats.txt,False,35.0
subject11_aseg_stats.txt,False,29.0
subject12_aseg_stats.txt,False,33.0
subject13_aseg_stats.txt,False,21.0
subject14_aseg_stats.txt,False,40.0
subject15_aseg_stats.txt,True,25.0
subject16_aseg_stats.txt,False,23.0
subject17_aseg_stats.txt,True,60.0
subject18_aseg_stats.txt,False,31.0
subject19_aseg_stats.txt,False,60.0
subject20_aseg_stats.txt,False,71.0
subject21_aseg_stats.txt,True,57.0
subject22_aseg_stats.txt,True,38.0
subject23_aseg_stats.txt,True,46.0
subject24_aseg_stats.txt,True,25.0
subject25_aseg_stats.txt,True,40.0
subject26_aseg_stats.txt,False,65.0
subject27_aseg_stats.txt,False,33.0
subject28_aseg_stats.txt,False,49.0
subject29_aseg_stats.txt,True,30.0
subject30_aseg_stats.txt,True,23.0
subject31_aseg_stats.txt,False,29.0
subject32_aseg_stats.txt,True,77.0
subject33_aseg_stats.txt,True,44.0
subject34_aseg_stats.txt,True,28.0
subject35_aseg_stats.txt,True,73.0
subject36_aseg_stats.txt,False,35.0
subject37_aseg_stats.txt,True,79.0
subject38_aseg_stats.txt,True,31.0
subject39_aseg_stats.txt,True,80.0
subject40_aseg_stats.txt,False,25.0
subject41_aseg_stats.txt,True,22.0
subject42_aseg_stats.txt,True,49.0
subject43_aseg_stats.txt,False,30.0
subject44_aseg_stats.txt,True,23.0
subject45_aseg_stats.txt,True,27.0
subject46_aseg_stats.txt,False,67.0
subject47_aseg_stats.txt,False,73.0
subject48_aseg_stats.txt,False,38.0
subject49_aseg_stats.txt,False,69.0
subject50_aseg_stats.txt,False,26.0
subject51_aseg_stats.txt,True,33.0
subject52_aseg_stats.txt,False,48.0
subject53_aseg_stats.txt,True,46.0
subject54_aseg_stats.txt,True,70.0
subject55_aseg_stats.txt,True,32.0
subject56_aseg_stats.txt,False,45.0
subject57_aseg_stats.txt,False,33.0
subject58_aseg_stats.txt,False,78.0
subject59_aseg_stats.txt,True,50.0
subject60_aseg_stats.txt,False,33.0
subject61_aseg_stats.txt,False,73.0
subject62_aseg_stats.txt,True,69.0
subject63_aseg_stats.txt,False,31.0
subject64_aseg_stats.txt,True,74.0
subject65_aseg_stats.txt,True,53.0
subject66_aseg_stats.txt,True,43.0
subject67_aseg_stats.txt,True,25.0
subject68_aseg_stats.txt,False,61.0
subject69_aseg_stats.txt,True,74.0
subject70_aseg_stats.txt,False,68.0
subject71_aseg_stats.txt,True,54.0
subject72_aseg_stats.txt,False,74.0
74 changes: 74 additions & 0 deletions algorithm-development/test-data/dpsvm-csv-test-data/input/local0/simulatorRun/site1_Data.csv
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67 changes: 67 additions & 0 deletions ...velopment/test-data/dpsvm-csv-test-data/input/local0/simulatorRun/subject0_aseg_stats.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
Measure:volume subject0
Left-Lateral-Ventricle 8670.45
Left-Inf-Lat-Vent 5109.80
Left-Cerebellum-White-Matter 13776.62
Left-Cerebellum-Cortex 43196.53
Left-Thalamus-Proper 2276.06
Left-Caudate 1433.14
Left-Putamen 1163.78
Left-Pallidum 2325.58
3rd-Ventricle 2115.49
4th-Ventricle 1359.72
Brain-Stem 16187.29
Left-Hippocampus 675.72
Left-Amygdala 4170.13
CSF 2860.91
Left-Accumbens-area 3422.32
Left-VentralDC 921.75
Left-vessel 4035.86
Left-choroid-plexus 3286.63
Right-Lateral-Ventricle 7860.62
Right-Inf-Lat-Vent 3032.62
Right-Cerebellum-White-Matter 14501.75
Right-Cerebellum-Cortex 42317.45
Right-Thalamus-Proper 495.24
Right-Caudate 96.04
Right-Putamen 793.06
Right-Pallidum 2631.73
Right-Hippocampus 2326.92
Right-Amygdala 3270.36
Right-Accumbens-area 6539.43
Right-VentralDC 148.85
Right-vessel 4210.81
Right-choroid-plexus 1869.24
5th-Ventricle 6188.10
WM-hypointensities 4313.20
Left-WM-hypointensities 4739.31
Right-WM-hypointensities 4070.90
non-WM-hypointensities 5090.65
Left-non-WM-hypointensities 4343.75
Right-non-WM-hypointensities 5560.37
Optic-Chiasm 4609.39
CC_Posterior 3775.87
CC_Mid_Posterior 4962.05
CC_Central 3733.33
CC_Mid_Anterior 3367.08
CC_Anterior 2146.83
BrainSegVol 1095317.40
BrainSegVolNotVent 1060824.57
BrainSegVolNotVentSurf 1059977.87
lhCortexVol 198721.60
rhCortexVol 201000.76
CortexVol 402759.47
lhCorticalWhiteMatterVol 229008.71
rhCorticalWhiteMatterVol 228434.93
CorticalWhiteMatterVol 459850.33
SubCortGrayVol 49351.80
TotalGrayVol 553475.01
SupraTentorialVol 959726.71
SupraTentorialVolNotVent 924495.48
SupraTentorialVolNotVentVox 925742.35
MaskVol 1625211.29
BrainSegVol-to-eTIV 3836.53
MaskVol-to-eTIV 4531.60
lhSurfaceHoles 6435.98
rhSurfaceHoles 4529.00
SurfaceHoles 3912.50
EstimatedTotalIntraCranialVol 1594525.18
67 changes: 67 additions & 0 deletions ...elopment/test-data/dpsvm-csv-test-data/input/local0/simulatorRun/subject10_aseg_stats.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
Measure:volume subject10
Left-Lateral-Ventricle 6116.66
Left-Inf-Lat-Vent 7930.72
Left-Cerebellum-White-Matter 11052.96
Left-Cerebellum-Cortex 41173.92
Left-Thalamus-Proper 371.72
Left-Caudate 3433.51
Left-Putamen 4283.01
Left-Pallidum 4047.69
3rd-Ventricle 3711.28
4th-Ventricle 2749.31
Brain-Stem 14400.24
Left-Hippocampus 925.31
Left-Amygdala 6864.37
CSF 4833.67
Left-Accumbens-area 5084.91
Left-VentralDC 3370.06
Left-vessel 5925.89
Left-choroid-plexus 5469.20
Right-Lateral-Ventricle 4437.00
Right-Inf-Lat-Vent 4656.59
Right-Cerebellum-White-Matter 11908.96
Right-Cerebellum-Cortex 39243.48
Right-Thalamus-Proper 4326.57
Right-Caudate 1293.85
Right-Putamen 3427.61
Right-Pallidum 4470.56
Right-Hippocampus 5558.44
Right-Amygdala 5652.72
Right-Accumbens-area 10240.78
Right-VentralDC 2078.82
Right-vessel 6139.38
Right-choroid-plexus 3364.28
5th-Ventricle 9216.10
WM-hypointensities 7376.49
Left-WM-hypointensities 7167.99
Right-WM-hypointensities 5930.19
non-WM-hypointensities 7507.74
Left-non-WM-hypointensities 6403.92
Right-non-WM-hypointensities 8455.09
Optic-Chiasm 6932.26
CC_Posterior 6114.18
CC_Mid_Posterior 7741.10
CC_Central 5811.53
CC_Mid_Anterior 5063.37
CC_Anterior 3439.11
BrainSegVol 1092088.81
BrainSegVolNotVent 1059164.96
BrainSegVolNotVentSurf 1058202.55
lhCortexVol 196660.79
rhCortexVol 199207.10
CortexVol 400045.19
lhCorticalWhiteMatterVol 226724.84
rhCorticalWhiteMatterVol 226050.36
CorticalWhiteMatterVol 456018.31
SubCortGrayVol 46664.76
TotalGrayVol 551101.44
SupraTentorialVol 957836.55
SupraTentorialVolNotVent 920990.04
SupraTentorialVolNotVentVox 923457.30
MaskVol 1622824.20
BrainSegVol-to-eTIV 5689.68
MaskVol-to-eTIV 6566.00
lhSurfaceHoles 9834.72
rhSurfaceHoles 6837.55
SurfaceHoles 5807.83
EstimatedTotalIntraCranialVol 1590797.44
67 changes: 67 additions & 0 deletions ...elopment/test-data/dpsvm-csv-test-data/input/local0/simulatorRun/subject11_aseg_stats.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
Measure:volume subject11
Left-Lateral-Ventricle 3976.41
Left-Inf-Lat-Vent 9548.51
Left-Cerebellum-White-Matter 9039.40
Left-Cerebellum-Cortex 38889.92
Left-Thalamus-Proper 2301.19
Left-Caudate 5516.92
Left-Putamen 5801.74
Left-Pallidum 6554.08
3rd-Ventricle 6069.95
4th-Ventricle 5101.75
Brain-Stem 11920.60
Left-Hippocampus 3716.14
Left-Amygdala 9083.04
CSF 7019.96
Left-Accumbens-area 7311.35
Left-VentralDC 5642.69
Left-vessel 8415.95
Left-choroid-plexus 7457.26
Right-Lateral-Ventricle 2632.22
Right-Inf-Lat-Vent 6879.92
Right-Cerebellum-White-Matter 9786.71
Right-Cerebellum-Cortex 37352.97
Right-Thalamus-Proper 5679.21
Right-Caudate 3630.05
Right-Putamen 5376.07
Right-Pallidum 6939.18
Right-Hippocampus 7289.31
Right-Amygdala 8008.90
Right-Accumbens-area 11651.80
Right-VentralDC 4497.33
Right-vessel 8637.40
Right-choroid-plexus 5587.57
5th-Ventricle 10789.81
WM-hypointensities 9141.55
Left-WM-hypointensities 9092.36
Right-WM-hypointensities 7970.88
non-WM-hypointensities 9358.58
Left-non-WM-hypointensities 8751.06
Right-non-WM-hypointensities 10273.81
Optic-Chiasm 9006.86
CC_Posterior 8044.84
CC_Mid_Posterior 9539.17
CC_Central 7868.68
CC_Mid_Anterior 7572.02
CC_Anterior 6190.56
BrainSegVol 1090192.41
BrainSegVolNotVent 1056769.75
BrainSegVolNotVentSurf 1055788.32
lhCortexVol 194349.35
rhCortexVol 197100.71
CortexVol 398230.11
lhCorticalWhiteMatterVol 224632.24
rhCorticalWhiteMatterVol 223819.14
CorticalWhiteMatterVol 454704.62
SubCortGrayVol 44767.90
TotalGrayVol 548977.81
SupraTentorialVol 955354.60
SupraTentorialVolNotVent 919437.10
SupraTentorialVolNotVentVox 921431.23
MaskVol 1620735.78
BrainSegVol-to-eTIV 8077.65
MaskVol-to-eTIV 8912.17
lhSurfaceHoles 11588.21
rhSurfaceHoles 8992.80
SurfaceHoles 7997.67
EstimatedTotalIntraCranialVol 1589419.53
67 changes: 67 additions & 0 deletions ...elopment/test-data/dpsvm-csv-test-data/input/local0/simulatorRun/subject12_aseg_stats.txt
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Original file line number Diff line number Diff line change
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Measure:volume subject12
Left-Lateral-Ventricle 6791.70
Left-Inf-Lat-Vent 7248.52
Left-Cerebellum-White-Matter 11750.03
Left-Cerebellum-Cortex 41758.63
Left-Thalamus-Proper 303.56
Left-Caudate 2870.15
Left-Putamen 3551.62
Left-Pallidum 3502.10
3rd-Ventricle 3202.64
4th-Ventricle 2281.02
Brain-Stem 14956.09
Left-Hippocampus 378.92
Left-Amygdala 6155.54
CSF 4266.90
Left-Accumbens-area 4574.62
Left-VentralDC 2704.12
Left-vessel 5349.27
Left-choroid-plexus 4878.77
Right-Lateral-Ventricle 5251.47
Right-Inf-Lat-Vent 4154.01
Right-Cerebellum-White-Matter 12590.00
Right-Cerebellum-Cortex 39997.73
Right-Thalamus-Proper 3471.81
Right-Caudate 826.87
Right-Putamen 2753.28
Right-Pallidum 3905.64
Right-Hippocampus 4787.34
Right-Amygdala 4992.42
Right-Accumbens-area 9406.16
Right-VentralDC 1500.57
Right-vessel 5554.64
Right-choroid-plexus 2886.60
5th-Ventricle 8497.66
WM-hypointensities 6634.97
Left-WM-hypointensities 6535.46
Right-WM-hypointensities 5397.71
non-WM-hypointensities 6883.69
Left-non-WM-hypointensities 5806.59
Right-non-WM-hypointensities 7741.55
Optic-Chiasm 6307.38
CC_Posterior 5498.56
CC_Mid_Posterior 7051.65
CC_Central 5235.38
CC_Mid_Anterior 4522.57
CC_Anterior 2955.68
BrainSegVol 1092873.42
BrainSegVolNotVent 1059689.03
BrainSegVolNotVentSurf 1058750.58
lhCortexVol 197255.20
rhCortexVol 199732.50
CortexVol 400723.58
lhCorticalWhiteMatterVol 227343.72
rhCorticalWhiteMatterVol 226700.47
CorticalWhiteMatterVol 456869.89
SubCortGrayVol 47344.85
TotalGrayVol 551740.27
SupraTentorialVol 958412.51
SupraTentorialVolNotVent 921798.90
SupraTentorialVolNotVentVox 924070.75
MaskVol 1623462.65
BrainSegVol-to-eTIV 5128.86
MaskVol-to-eTIV 5973.74
lhSurfaceHoles 9029.41
rhSurfaceHoles 6208.58
SurfaceHoles 5255.71
EstimatedTotalIntraCranialVol 1591634.35
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