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TPLs BLAS and LAPACK: Add OpenBLAS to library names #13567

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@cgcgcg cgcgcg commented Nov 1, 2024

@trilinos/framework @bartlettroscoe

Motivation

This allows to use OpenBLAS for BLAS and LAPACK without additional configuration.

@cgcgcg cgcgcg added the PA: Framework Issues that fall under the Trilinos Framework Product Area label Nov 1, 2024
@cgcgcg cgcgcg requested review from bartlettroscoe and a team November 1, 2024 19:35
@cgcgcg cgcgcg self-assigned this Nov 1, 2024
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I think we need to keep blas and lapack first in the lists or that breaks backwards compatibility.

Also, it would be good to update the GenConfig files to use the updated default finds to test this change.

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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

This allows to use OpenBLAS for BLAS and LAPACK without additional
configuration.

Signed-off-by: Christian Glusa <[email protected]>
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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

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Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

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CDash Test Results for PR# 13567.


Wiki: How to Reproduce PR Testing Builds and Errors.

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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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  • Branch: openblas
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Pull Request Author: cgcgcg

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CDash Test Results for PR# 13567.

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Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS NOT BEEN REVIEWED YET!

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All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

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Also, it would be good to update the GenConfig files to use the updated default finds to test this change.

Unfortunately, it looks like you may not be able to just rip out the specification of BLAS and LAPACK and let configure find openblas by default (which is what this PR enables). It seems that the static openblas lib is being pointed to as shown in:

opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : -L${BLAS_ROOT|ENV}/lib;-lopenblas;-lgfortran;-lgomp

and in the configure output here showing:

Processing enabled external package/TPL: BLAS (enabled explicitly, disable with -DTPL_ENABLE_BLAS=OFF)
-- BLAS_LIBRARY_NAMES='blas blas_win32 openblas'
-- TPL_BLAS_LIBRARIES='-L/lib;-lopenblas;-lgfortran;-lgomp'

But it seems harmless to try to rip all of this out and see what happens on all of these platforms.

In a desire to make Trilinos easier to configure by default, try to use the
default finds for BLAS and LAPACK.

Signed-off-by: Roscoe A. Bartlett <[email protected]>
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But it seems harmless to try to rip all of this out and see what happens on all of these platforms.

I am giving that a try with c597034. Let's see how that goes :-)

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This passes all the automate builds, then it should be fine to emerge?

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Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

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Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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  • Branch: openblas
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Pull Request Author: cgcgcg

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  • Branch: openblas
  • SHA: c597034
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Pull Request Author: cgcgcg

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PR_LABELS PA: Framework
PULLREQUESTNUM 13567
PULLREQUEST_CDASH_TRACK Pull Request
TEST_REPO_ALIAS TRILINOS
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TRILINOS_SOURCE_REPO https://github.com/cgcgcg/Trilinos
TRILINOS_SOURCE_SHA c597034
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Test Name: PR_gcc

  • Build Num: 742
  • Status: FAILED

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GENCONFIG_BUILD_NAME rhel8_sems-gnu-8.5.0-serial_release-debug_shared_no-kokkos-arch_no-asan_no-complex_no-fpic_no-mpi_no-pt_no-rdc_no-uvm_deprecated-on_no-package-enables
PR_LABELS PA: Framework
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TRILINOS_SOURCE_SHA c597034
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TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 76e401d

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Test Name: PR_gcc-openmpi_debug

  • Build Num: 743
  • Status: PASSED

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  • Build Num: 741
  • Status: PASSED

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Test Name: Trilinos_PR_python3

  • Build Num: 4700
  • Status: PASSED

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Test Name: PR_cuda

  • Build Num: 740
  • Status: FAILED

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Test Name: PR_intel

  • Build Num: 661
  • Status: PASSED

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PR_LABELS PA: Framework
PULLREQUESTNUM 13567
PULLREQUEST_CDASH_TRACK Pull Request
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Build Information

Test Name: PR_cuda-uvm

  • Build Num: 740
  • Status: PASSED

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PR_LABELS PA: Framework
PULLREQUESTNUM 13567
PULLREQUEST_CDASH_TRACK Pull Request
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TRILINOS_SOURCE_REPO https://github.com/cgcgcg/Trilinos
TRILINOS_SOURCE_SHA c597034
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TRILINOS_TARGET_BRANCH develop
TRILINOS_TARGET_REPO https://github.com/trilinos/Trilinos
TRILINOS_TARGET_SHA 76e401d


CDash Test Results for PR# 13567.


Wiki: How to Reproduce PR Testing Builds and Errors.

@bartlettroscoe
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Wow, only the CUDA build showed any errors after ripping out the BLAS and LAPACK specs:

showing build errors like [here[(https://trilinos-cdash.sandia.gov/viewBuildError.php?buildid=1936670) showing:

/projects/sems/install/rhel8-x86_64/sems/tpl/openblas/0.3.10/gcc/10.1.0/base/6nrzbo6/lib/libopenblas.a(sgesvd.o): In function `sgesvd_':
sgesvd.f:(.text+0x96e): undefined reference to `_gfortran_concat_string'
sgesvd.f:(.text+0xbf2): undefined reference to `_gfortran_concat_string'
/projects/sems/install/rhel8-x86_64/sems/tpl/openblas/0.3.10/gcc/10.1.0/base/6nrzbo6/lib/libopenblas.a(shseqr.o): In function `shseqr_':
shseqr.f:(.text+0x470): undefined reference to `_gfortran_concat_string'
/projects/sems/install/rhel8-x86_64/sems/tpl/openblas/0.3.10/gcc/10.1.0/base/6nrzbo6/lib/libopenblas.a(sormbr.o): In function `sormbr_':
sormbr.f:(.text+0x3ac): undefined reference to `_gfortran_concat_string'
sormbr.f:(.text+0x579): undefined reference to `_gfortran_concat_string'
/projects/sems/install/rhel8-x86_64/sems/tpl/openblas/0.3.10/gcc/10.1.0/base/6nrzbo6/lib/libopenblas.a(sormbr.o):sormbr.f:(.text+0x6a9): more undefined references to `_gfortran_concat_string' follow
collect2: error: ld returned 1 exit status

So when you are using a static BLAS, you need to be pulling in libgfortran.

But the other builds are now showing default finds for BLAS and LAPACK like for the build:

showing:

Processing enabled external package/TPL: BLAS (enabled explicitly, disable with -DTPL_ENABLE_BLAS=OFF)
-- BLAS_LIBRARY_NAMES='blas blas_win32 openblas'
-- Must find at least one lib in each of the lib sets "blas blas_win32 openblas"
-- Searching for libs in BLAS_LIBRARY_DIRS=''
-- Searching for a lib in the set "blas blas_win32 openblas":
--   Searching for lib 'blas' ...
--     Found lib '/usr/lib64/libblas.so'
-- TPL_BLAS_LIBRARIES='/usr/lib64/libblas.so'

I don't see any examples of where openblas was find. I guess that is just in the container and we don't see any container builds in current PR testing?

@bartlettroscoe
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If we really want to improve the default BLAS and LAPACK, find, we should just pull the trigger on switching to find_package(BLAS) and find_package(LAPACK) by maintaining backwards compatibility as described in:

That will change the default find but will maintain behavior for customers that are explicitly specifying the libraries.

@sebrowne
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sebrowne commented Nov 4, 2024

I started prototyping that here: sebrowne@d1e0168 but have not tested it exhaustively yet.

@sebrowne
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sebrowne commented Nov 4, 2024

Yes, we only use openblas in the containers. The static library dependencies are the only risk here, as identified by the PR testing. If we want to go this route, we could leave those configuration settings in-place for the CUDA builds I suppose.

@bartlettroscoe
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Yes, we only use openblas in the containers.

@sebrowne, where can we see the containers configuration and build output on GHA? I looked and I can't seem to find them.

@sebrowne
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sebrowne commented Nov 14, 2024

Yes, we only use openblas in the containers.

@sebrowne, where can we see the containers configuration and build output on GHA? I looked and I can't seem to find them.

Here is our configuration repository. Those are planned to be moved into the main repository here (hopefully very soon).

Action output is here (for example, I chose one). If you look here you can see the summary, which includes the container image used

@sebrowne
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The tricky thing is that this also doesn't play super nicely with the TriBITS behavior engaged with Trilinos_MUST_FIND_ALL_TPL_LIBS_DEFAULT TRUE (haven't tested it out, but I would expect that option to be fundamentally incompatible with this approach).

@bartlettroscoe
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The tricky thing is that this also doesn't play super nicely with the TriBITS behavior engaged with Trilinos_MUST_FIND_ALL_TPL_LIBS_DEFAULT TRUE (haven't tested it out, but I would expect that option to be fundamentally incompatible with this approach).

@sebrowne, how so? Can you give an example?

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After investigation, I think this is acceptable for now (eventually we should probably use the find_package() approach). I recommend leaving the specifications in-place for the AT1 specs, since there may be multiple BLAS/LAPACK on the system, whereas in our AT2 containers we can be more reasonably certain that it's using the specific one we want.

@@ -1734,7 +1717,6 @@ opt-set-cmake-var Teko_DISABLE_LSCSTABALIZED_TPETRA_ALPAH_INV_D BOOL : O
opt-set-cmake-var CMAKE_CXX_FLAGS STRING : -fno-strict-aliasing -Wall -Wno-clobbered -Wno-vla -Wno-pragmas -Wno-unknown-pragmas -Wno-unused-local-typedefs -Wno-literal-suffix -Wno-deprecated-declarations -Wno-misleading-indentation -Wno-int-in-bool-context -Wno-maybe-uninitialized -Wno-class-memaccess -Wno-inline -Wno-nonnull-compare -Wno-address

# TPL_BLAS_LIBRARIES is redefined here with libm for SuperLU to properly link
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : -L${BLAS_ROOT|ENV}/lib;-lblas;-lgfortran;-lgomp;-lm
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@@ -1608,13 +1593,11 @@ opt-set-cmake-var TPL_ENABLE_Zlib BOOL FORCE : ON

#TPL_*_LIBRARIES
# see https://github.com/trilinos/Trilinos/issues/11109#issuecomment-1272146298
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : /lib64/libblas.so.3
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opt-set-cmake-var TPL_BoostLib_LIBRARIES STRING FORCE : ${BOOST_LIB|ENV}/libboost_program_options.a;${BOOST_LIB|ENV}/libboost_system.a
opt-set-cmake-var TPL_Boost_LIBRARIES STRING FORCE : ${BOOST_LIB|ENV}/libboost_program_options.a;${BOOST_LIB|ENV}/libboost_system.a
opt-set-cmake-var TPL_DLlib_LIBRARIES FILEPATH FORCE : "-ldl"
opt-set-cmake-var TPL_HDF5_LIBRARIES STRING FORCE : ${HDF5_LIB|ENV}/libhdf5_hl.so;${HDF5_LIB|ENV}/libhdf5.a;${ZLIB_LIB|ENV}/libz.a;-ldl
# see https://github.com/trilinos/Trilinos/issues/11109#issuecomment-1272146298
opt-set-cmake-var TPL_LAPACK_LIBRARIES STRING FORCE : /lib64/liblapack.so.3
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opt-set-cmake-var TPL_BoostLib_LIBRARIES STRING FORCE : ${BOOST_LIB|ENV}/libboost_program_options.a;${BOOST_LIB|ENV}/libboost_system.a
opt-set-cmake-var TPL_Boost_LIBRARIES STRING FORCE : ${BOOST_LIB|ENV}/libboost_program_options.a;${BOOST_LIB|ENV}/libboost_system.a
opt-set-cmake-var TPL_DLlib_LIBRARIES FILEPATH FORCE : "-ldl"
opt-set-cmake-var TPL_HDF5_LIBRARIES STRING FORCE : ${HDF5_LIB|ENV}/libhdf5_hl.so;${HDF5_LIB|ENV}/libhdf5.a;${ZLIB_LIB|ENV}/libz.a;-ldl
# see https://github.com/trilinos/Trilinos/issues/11109#issuecomment-1272146298
opt-set-cmake-var TPL_LAPACK_LIBRARIES STRING FORCE : /lib64/liblapack.so.3
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@@ -1466,13 +1453,11 @@ opt-set-cmake-var TPL_ENABLE_Zlib BOOL FORCE : ON

#TPL_*_LIBRARIES
# see https://github.com/trilinos/Trilinos/issues/11109#issuecomment-1272146298
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : /lib64/libblas.so.3
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Comment on lines -1220 to -1221
opt-set-cmake-var TPL_LAPACK_LIBRARIES STRING FORCE : -L${BLAS_ROOT|ENV}/lib;-lopenblas;-lgfortran;-lgomp
opt-set-cmake-var TPL_LAPACK_LIBRARY_DIRS STRING FORCE : ${BLAS_ROOT|ENV}/lib
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Comment on lines -1214 to -1215
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : -L${BLAS_ROOT|ENV}/lib;-lopenblas;-lgfortran;-lgomp
opt-set-cmake-var TPL_BLAS_LIBRARY_DIRS STRING FORCE : ${BLAS_ROOT|ENV}/lib
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Comment on lines -1178 to -1181
opt-set-cmake-var TPL_BLAS_LIBRARY_DIRS STRING FORCE : ${CBLAS_ROOT|ENV}/lib
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : ${CBLAS_ROOT|ENV}/lib/libblas.a;-L${CBLAS_ROOT|ENV}/lib;-lgfortran;-lgomp;-lm
opt-set-cmake-var TPL_LAPACK_LIBRARY_DIRS STRING FORCE : ${LAPACK_ROOT|ENV}/lib
opt-set-cmake-var TPL_LAPACK_LIBRARIES STRING FORCE : -L${LAPACK_ROOT|ENV}/lib;-lgfortran;-lgomp;${LAPACK_ROOT|ENV}/lib/liblapack.a
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Comment on lines -402 to +400
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING FORCE : -L${BLAS_ROOT|ENV}/lib;-lblas;-lgfortran;-lgomp
opt-set-cmake-var TPL_BLAS_LIBRARY_DIRS STRING FORCE : ${BLAS_ROOT|ENV}/lib
opt-set-cmake-var TPL_LAPACK_LIBRARIES STRING FORCE : -L${BLAS_ROOT|ENV}/lib;-llapack;-lgfortran;-lgomp
opt-set-cmake-var TPL_LAPACK_LIBRARY_DIRS STRING FORCE : ${BLAS_ROOT|ENV}/lib
# Use default finds
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Comment on lines -395 to -396
opt-set-cmake-var TPL_BLAS_LIBRARIES STRING : ${BLAS_LIBRARIES|ENV}
opt-set-cmake-var TPL_LAPACK_LIBRARIES STRING : ${LAPACK_LIBRARIES|ENV}
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@sebrowne
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@sebrowne, how so? Can you give an example?

I went and read the documentation more carefully and tested it out. I did not know about the 'inner-space-separated quoted' behavior. So I take it back, this will probably work perfectly fine.

@bartlettroscoe
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I recommend leaving the specifications in-place for the AT1 specs, since there may be multiple BLAS/LAPACK on the system, whereas in our AT2 containers we can be more reasonably certain that it's using the specific one we want.

Might be easier to specify what removals to keep 😊

(I just removed everything to see how many builds still worked after removing the explicit determinations of BLAS and LAPACK libraries.)

@sebrowne
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@bartlettroscoe fair enough. I took a look through the file and found some other issues relating to inheritance (which has happened many times in the past), so I'm going to try and clean up all of them (if it's not too bad, I may just push it to this MR to help out, but if it's logically separable, I'll open a different PR).

@cgcgcg
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cgcgcg commented Nov 27, 2024

@sebrowne Feel free to push to it.

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