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Add 2D covariant form using P4estMesh#31

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tristanmontoya wants to merge 89 commits intomaintrixi-framework/TrixiAtmo.jl:mainfrom tm/covariant_formtrixi-framework/TrixiAtmo.jl:tm/covariant_formCopy head branch name to clipboard

+1,222-159

Commits

Commits on Jul 18, 2024

• linear advection on the sphere

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  7ff4a57

• formatter

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  8236b78

• very preliminary implementation of covariant form with p4est

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  fcf6c75

• removed untracked

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• removed allocations, now 100x faster

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• add DS_Store to gitignore

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  c64a293

• add DS_Store to gitignore

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  5374da9

• made equations actually 2D

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  f9a4163

• integrated upstream changes

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  3abdaa6

• analysis callback for covariant form

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  e6e08aa

Commits on Jul 19, 2024

• cleanup

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  e153f11

Commits on Jul 25, 2024

• separate Andres's spherical shell containers from main Trixi

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  f45378e

Commits on Jul 26, 2024

• Added containers and 2D p4est mesh from my spherical shell implementation in Trixi.jl (cherry-picked from f45378e)

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  and

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  24a3793

• Added element container with PtrArray for performance and modified the structure

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  eb768d9

• format

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  ca44965

• Fixed bug in the definition of init_elements and added nelements(). eltype() and ndims() functions for new struct

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  8ec3e9c

Commits on Jul 29, 2024

• Merge remote-tracking branch 'origin/arr/spherical_shell' into tm/p4est_new_container

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  7caca96

• integrated Andres's new container type with covariant solver

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  f32afdf

Commits on Aug 6, 2024

• Merge remote-tracking branch 'origin/main' into tm/p4est_new_container

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  b5df5c1

Commits on Aug 8, 2024

• added flux-differencing kernel for covariant form

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  c5483f3

Commits on Aug 15, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_flux_differencing

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  bab3363

• integrated Andrés' PR with covariant solver

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  bc1da0a

Commits on Aug 17, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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  3d4f809

• add tests for spherical advection in Cartesian coords

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  ae53831

• revert change to moist bubble case

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  eb81ca5

• revert change to moist bubble case

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  e9ec616

• Merge branch 'tm/test_spherical_advection' into tm/covariant_form

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  e0c6303

• covariant weak form with tests

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  98b0f0e

• removed shallow water from this branch

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  9799f81

Commits on Aug 18, 2024

• reorganize a bit

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  73dda27

Commits on Aug 20, 2024

• hard-code dimension of node coordinates to avoid type instability

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  7de998a

• metric terms for shell of radius != 1

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  317033a

• Merge remote-tracking branch 'origin/tm/test_spherical_advection' into tm/covariant_form

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  2fd7610

Commits on Aug 21, 2024

• test for covariant form is now on earth scale

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  351eb7a

Commits on Aug 22, 2024

• fix name of cartesian test

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  add6cc7

Commits on Sep 1, 2024

• moved i,j,element,cache into flux signatures for covariant form

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  e1eb237

• added test for flux differencing covariant form

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  c4211d3

• Merge branch 'main' into tm/covariant_form

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  2fa4e01

Commits on Sep 4, 2024

• transformation between local coordinate systems now uses latitude-longitude as intermediate state, not Cartesian

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  44ac576

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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  73e858a

• format

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  fc52dfe

Commits on Sep 7, 2024

• make compatible with my PR trixi-framework/Trixi.jl#2068

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  2067837

• Merge remote-tracking branch 'origin/tm/p4est_mesh_compat' into tm/covariant_form

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  808e74c

Commits on Sep 9, 2024

• separate containers to store geometric information specific to covariant form

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  2d5e6c5

Commits on Sep 10, 2024

• add element-local mapping from Guba et al.

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  6d4ae0d

• add reference to Guba et al. to docstring

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  bcb9fda

• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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  f4f94fb

• new mapping works with cartesian solver solver in covariant_form branch

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  a69b558

• exact metrics for element-local mapping

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  d2cd693

• streamline tests and improve readability

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  4324e62

• rename default DGSEM mapping

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  c46d20b

• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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  937c069

Commits on Sep 11, 2024

• didn't need new analysis cache

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  7ff3331

• improve comments

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  1248f88

Commits on Sep 12, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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  9504e9c

Commits on Sep 13, 2024

• refactor

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  936dc49

• remove DiffEqCallbacks for now

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  c4adf7c

Commits on Sep 14, 2024

• add better comments

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  ad0a60e

• improve comments

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  4b3642c

• better documentation

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  d3bc8f7

Commits on Sep 15, 2024

• add NDIMS_AMBIENT parameter to equations

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  7d7ec99

Commits on Oct 5, 2024

• Merge remote-tracking branch 'origin/main' into tm/element_local_mapping

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  e5b3602

• fix docstring format

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  4de0ca3

• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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  4412add

• make link in docs work

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  731fa69

• fix link in docs

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  ca7118c

• Merge branch 'tm/element_local_mapping' into tm/covariant_form

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  7db2950

• documentation for the covariant solver

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  13fe226

Commits on Oct 12, 2024

• added surface central flux and test

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  f8b76ee

• fix trixi_compat

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  be033ab

• specialize compute_coefficients! to dimension 2

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  87143be

• format

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  b8dc13a

• fix spelling

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  2b475d5

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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  eab59ff

Commits on Oct 17, 2024

• remove initial_condition parameter from rhs

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  4cc1ec9

Commits on Nov 4, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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  58ed6a9

• no need to use Float32 for physical constant defaults

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  fb379e0

• incorporate downstream changes

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  a4d7e4f

• format

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  9137903

Commits on Nov 6, 2024

• Merge remote-tracking branch 'origin/main' into tm/covariant_form

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  9333aa6

Commits on Nov 10, 2024

• merge changes from PR #36 (work in progress)

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  9e9b3d7

Commits on Nov 11, 2024

• standardize test cases

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  78f8593

• move covariant form max_dt method to callbacks_step

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  5d71c5a

• Fix comments

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  4f1b3dc

• generalize interface between equations and cache

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  0f0a8e7

• relax relative tolerance on cartesian advection test)

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  6d11443

Commits on Nov 12, 2024

• improve docs

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  d515349

Commits on Nov 13, 2024

• streamline initial condition definition and improve docs

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  90fa2a6

• tests for cartesian form now use standard and element-local mapping approaches

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  b7a7f5a