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Complete docs #309

Workflow file for this run

name: Tests
on:
pull_request:
push:
branches: [main, test]
jobs:
pre-commit:
name: Lint
runs-on: ubuntu-latest
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.11'
- uses: pre-commit/[email protected]
test:
name: Python
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
python: [ "3.11" ]
os: [ ubuntu-latest, ]
defaults:
run:
shell: bash
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- name: Checkout
uses: actions/checkout@v3
- uses: actions/setup-python@v4
with:
python-version: '3.11'
cache: 'pip'
- name: Install deps
run: |
pip install -r requirements.txt
playwright install
- name: Tests with numba
run: coverage run --source=tsbrowse -m pytest -x tests
- name: Tests with coverage (no numba)
run: TSBROWSE_DISABLE_NUMBA=1 coverage run --source=tsbrowse -m pytest -x tests
- name: Upload coverage
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
coveralls --service=github
- name: Build wheel
run: python -m build --wheel
- name: Install wheel
run: |
pip install dist/*.whl
python -m tsbrowse --help