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Merge pull request #170 from hyanwong/patch-1
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jeromekelleher authored Sep 13, 2024
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# tsbrowse
Utilities for evaluating large genetic genealogies (e.g. ARGs) stored in the [tskit](https://tskit.dev) "succinct tree sequence" format.
This is targetted at ARGs that have been inferred using a variety of inference tools such as `tsinfer`, `sc2ts`, `Relate`, `kwARG`, `ARGneedle`, etc.

Inspect large genetic genealogies (e.g. ARGs) stored in the [tskit](https://tskit.dev) "succinct tree sequence" format,
via a genome browser style app. _Tsbrowse_ can deal with ARGs of thousands or potentially millions of samples.
It is particularly useful to help evaluate ARGs that have been inferred using tools such as
[tsinfer](https://github.com/tskit-dev/tsinfer),
[sc2ts](https://github.com/tskit-dev/sc2ts),
[Relate](https://github.com/MyersGroup/relate),
[KwARG](https://github.com/a-ignatieva/kwarg),
[Threads](https://pypi.org/project/threads-arg/), etc.

To launch the app use:

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