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Experimental hmm #959

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Experimental hmm #959

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Commits on Sep 4, 2024

  1. Do not weight recombination by n in LS HMM

    @jeromekelleher
    jeromekelleher committed Sep 4, 2024
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  2. C lib changes for precision->likelihood_threshold

    @jeromekelleher
    jeromekelleher committed Sep 4, 2024
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  3. Python changes for precision->likelihood_thresold 

    Also update the Python implementation to match the C one
    @jeromekelleher
    jeromekelleher committed Sep 4, 2024
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Commits on Nov 5, 2024

  1. Port version of tskit's blk_alloc using c11 atomics 

    Minimal changes to use c11

Update setup.py for Windows C11
    @jeromekelleher
    jeromekelleher committed Nov 5, 2024
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  2. Workaround lack of Windows support for stdatomic.h

    @jeromekelleher
    jeromekelleher committed Nov 5, 2024
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  3. Skip problematic test and fix formatting issue

    @jeromekelleher
    jeromekelleher committed Nov 5, 2024
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  4. C changes to enable non-zero ancestral state

    @jeromekelleher
    jeromekelleher committed Nov 5, 2024
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  5. Add low-level Python-C support for arbirary ancestral state

    @jeromekelleher
    jeromekelleher committed Nov 5, 2024
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Commits on Nov 6, 2024

  1. Remove requirement that alleles are < num_alleles

    @jeromekelleher
    jeromekelleher committed Nov 6, 2024
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