fix: yaml #389
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python on pull request | |
| on: | |
| pull_request: | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| - cron: '0 0 1 * *' | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.11] | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python-version }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up mamba ${{ matrix.python-version }} | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.3.1-0' | |
| environment-file: environment.yml | |
| init-shell: bash | |
| environment-name: pyTMD | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Create mamba Test Environment | |
| run: | | |
| mamba install openblas-devel flake8 pytest pytest-cov cython jplephem octave oct2py | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Checkout Matlab TMD Toolbox | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: tsutterley/TMD_Matlab_Toolbox_v2.5 | |
| path: TMD_Matlab_Toolbox | |
| ref: inferminor | |
| - name: Test with pytest | |
| run: | | |
| pip install --no-deps . | |
| if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi | |
| pytest --verbose --capture=no --cov=./ --cov-report=xml \ | |
| --username=${{ secrets.EARTHDATA_USERNAME }} \ | |
| --password=${{ secrets.EARTHDATA_PASSWORD }} \ | |
| --aws-access=${{ secrets.AWS_ACCESS_KEY_ID }} \ | |
| --aws-secret=${{ secrets.AWS_SECRET_ACCESS_KEY }} \ | |
| --aws-region=${{ secrets.AWS_REGION_NAME }} | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: OS,PYTHON | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| - name: Archive code coverage results | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: code-coverage-report | |
| path: ./coverage.xml |