Merge pull request #95 from uparma/mx/iem_params

added style and params for isotopologue envelope matching
uparma · Jul 20, 2022 · 17ef733 · 17ef733
2 parents 73dfb30 + b8532fc
commit 17ef733
Show file tree

Hide file tree

Showing 2 changed files with 11 additions and 0 deletions.
diff --git a/jsons/parameters.json b/jsons/parameters.json
@@ -89,6 +89,7 @@
         "description": "absolute mass tolerance for post-acquisition mass axis re-calibration",
         "key_translations": {
             "annotate_metabolites_style_1": "delta_abs_t",
+            "isotopologue_envelope_matching_style_1": "delta_abs_t",
             "recalibrate_mz_global_style_1": "delta_abs_t",
             "ursgal_style_1": "absolute_mass_tolerance"
         },
@@ -9867,6 +9868,7 @@
         "description": " Min number of matched isotopologues to consider for quantification ",
         "key_translations": {
             "flash_lfq_style_1": "--nis",
+            "isotopologue_envelope_matching_style_1": "min_isotopologues",
             "pyqms_style_1": "MINIMUM_NUMBER_OF_MATCHED_ISOTOPOLOGUES",
             "sugarpy_plot_style_1": "MINIMUM_NUMBER_OF_MATCHED_ISOTOPOLOGUES",
             "sugarpy_run_style_1": "MINIMUM_NUMBER_OF_MATCHED_ISOTOPOLOGUES",
@@ -13564,6 +13566,7 @@
         "description": "Defines if charge mismatches should be removed.",
         "key_translations": {
             "annotate_metabolites_style_1": "remove_charge_mismatches",
+            "isotopologue_envelope_matching_style_1": "remove_charge_mismatches",
             "ursgal_style_1": "remove_charge_mismatches"
         },
         "name": "remove_charge_mismatches",

diff --git a/jsons/styles.json b/jsons/styles.json
@@ -638,5 +638,13 @@
       "1.0.0"
     ],
     "reference": "Ursgal2 Team"
+  },
+  {
+    "style": "isotopologue_envelope_matching_style_1",
+    "name": "isotopologue_envelope_matching_style_1",
+    "versions": [
+      "1.0.0"
+    ],
+    "reference": "Ursgal2 Team"
   }
 ]