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Change to PanSN "scaffolds" with colon and dash coordinate ranges #97

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Change to PanSN "scaffolds" with colon and dash coordinate ranges #97

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Commits on Apr 12, 2024

  1. Adopt sample#hap#contig:start-end subpath notation and add concept of… 

    … a sample#hap#contig scaffold
    @adamnovak
    adamnovak committed Apr 12, 2024
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Commits on Apr 19, 2024

  1. Document how PanSN usually numbers things now

    @adamnovak
    adamnovak committed Apr 19, 2024
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  2. Force for_each_path_matching_impl to upgrade

    @adamnovak
    adamnovak committed Apr 19, 2024
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  3. Update docs with new path sense constant names

    @adamnovak
    adamnovak committed Apr 19, 2024
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  4. Convert to 0-based internal indexing when parsing and creating path n… 

    …ames
    @adamnovak
    adamnovak committed Apr 19, 2024
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