WIP: MEEG data #27
WIP: MEEG data #27
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How do I see the data that I've added? I click the "login" button, but a window pops up and immediately disappears. I assume I need to actually add a user to the system somewhere...? Also, in the code I have a lot of |
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Since Kevin has left our team, this repo has been largely unmaintained. I will add line comments to your code regarding the |
| @property | ||
| def nims_group_id(self): | ||
| # XXX | ||
| return 'group_id' |
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SciTran data are organized in a group, project, session, acquisition hierarchy. A group is approximately equivalent to a university research lab. The group "owns" the project. If the provided group does not exist, data will end up in the "unknown" group. By default, live.sh provisions a "scitran" group.
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I provided my gmail address during the configure step, but when I click "login" a window quickly appears and disappears. Not sure what the deal is with that. I assumed the CI errors were due to |
| @property | ||
| def nims_session_id(self): | ||
| # XXX | ||
| return 'session_id' |
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This is a unique ID for the session that contains this acquisition. A session is roughly equivalent to a DICOM study. For DICOM we use the study instance UID.
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Actually, we're going to run into the same problem here as we did in https://github.com/scitran/scitran/pull/57, namely that I need to install |
| @property | ||
| def nims_session_subject(self): | ||
| # XXX | ||
| return 'subj_code' |
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An identifier for the subject. For DICOM, we get this from the patient ID.
| @property | ||
| def nims_acquisition_id(self): | ||
| # XXX | ||
| return 'nims_acquisition_id' |
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This is a unique ID for this acquisition. An acquisition is roughly equivalent to a DICOM series. For DICOM we use the series instance UID.
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That is probably the Google login window that comes and goes. Please try using Chrome with the default popup blocking settings. |
| 'field': 'subj_dob', | ||
| 'title': 'Date of Birth', | ||
| 'type': 'string', | ||
| 'format': 'date', |
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@gsfr how / where do I populate these fields? I looked at DICOM, and at least to start, I know I can fill these fields based on what's in the MEG files.
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ahhh, based on looking at other modules, I think I need to set the e.g. .subj_firstname attribute of the Reader class.
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That's what I'm on (Chrome w/defaults) I think. I actually see the window open up and close, so it's not getting blocked. And If I have the webpage open, and kill the server, then the window opens with a URL and a not-found error as you'd expect -- but it at least indicates that, when the server is running, it is visiting the appropriate URL and auto-closes really quickly. Is that normal behavior? Even after that there is no indication that I am logged in, the "Login" link is still there, and clicking it still makes the window pop up and disappear. |
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FYI Travis build time dropped from 4 minutes to 1:42 with the use of the |
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Sounds like you have CI figured out. I think the rules are pretty loose in this repo, given the lack of a maintainer. I really don't know what's going on with the login window. Have you looked at Chrome's console? @rentzso Could you please upgrade SDM so that a fresh install via |
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@gsfr done with this commit: https://github.com/scitran/sdm/commit/fdbaba40bc8b95f4b38ba3fb844c989c30a13eeb |
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Closing for PR into |
Currently in the state that it will store the data in
persistent/data/when used with scitran/reaper#12 and https://github.com/scitran/scitran/pull/57.Closes #4.