Installation

Installation

Before you start

SPLICE-q requires Python 3.6+. To check your Python version, run in your terminal (Mac/Linux/Win):

 $ python --version

You should get a output like Python 3.6.3. If you do not have Python (or need to update it), please install the latest 3.x version from python.org.

Use pip for installing

Using pip is the easiest way to install SPLICE-q. First, make sure you have pip available.

 $ pip --version

You should see an output displaying the pip version, as well as the location and Python version. If you don't, please install it by following the instructions for your system as described here.

Install SPLICE-q

SPLICE-q can be installed from pip and from source.

pip

 $ pip install SPLICE-q

Development/install from source

 $ git clone https://github.com/vrmelo/SPLICE-q
 $ cd SPLICE-q
 $ pip install -e .

Requirements

• Python 3.6+
• PySam
• InterLap
• NumPy
• Rich

Operating Systems

• Linux, macOS, and Windows 10 Subsystem for Linux.