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Nicer code review experience with jupytext and black #62

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merged 8 commits into from
Nov 27, 2018
+1,906 −315
Merged

Nicer code review experience with jupytext and black #62

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495986d
:heavy_plus_sign: Add jupytext converter
weiji14 Nov 26, 2018
2031233
:busts_in_silhouette: Pairing notebooks with scripts using jupytext
weiji14 Nov 26, 2018
20fcb35
:heavy_plus_sign: Add black code linter
weiji14 Nov 26, 2018
8487e88
:art: Auto lint jupyter notebooks with black
weiji14 Nov 26, 2018
c30567d
:art: Pair and lint test_ipynb notebook using jupytext and black
weiji14 Nov 26, 2018
f530d05
:lipstick: Badges for github top language and black
weiji14 Nov 26, 2018
2b8016a
:robot: Adding .stickler.yml (#63)
stickler-ci Nov 26, 2018
4a63b69
:rotating_light: Try using black instead of flake8
weiji14 Nov 26, 2018
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1 change: 1 addition & 0 deletions .env
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LD_LIBRARY_PATH=${CONDA_PREFIX}/lib/
GMT_LIBRARY_PATH=${CONDA_PREFIX}/lib/
JUPYTER_CONFIG_DIR=${PWD}/.jupyter
1 change: 1 addition & 0 deletions .gitignore
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.jupyter/
**/.ipynb_checkpoints
**/*.csv
**/*.txt
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6 changes: 6 additions & 0 deletions .jupyter/jupyter_notebook_config.py
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# Configuration file for jupyter-notebook.

## Jupytext https://github.com/mwouts/jupytext

c.NotebookApp.contents_manager_class = "jupytext.TextFileContentsManager"
c.ContentsManager.preferred_jupytext_formats_save = "py:percent"
4 changes: 4 additions & 0 deletions .stickler.yml
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linters:
black:
py36: true
fixer: false
2 changes: 2 additions & 0 deletions Pipfile
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Expand Up @@ -4,10 +4,12 @@ verify_ssl = true
name = "pypi"

[packages]
black = "==18.9b0"
cython = "==0.29.1"
gmt = {editable = true, ref = "0.1a3-131-g9772fa3", git = "https://github.com/weiji14/gmt-python.git"}
ipython = "==7.1.1"
jupyterlab = "==0.35.4"
jupytext = "==0.8.6rc0"
keras = "==2.2.4"
livelossplot = "==0.2.0"
matplotlib = "==3.0.2"
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117 changes: 81 additions & 36 deletions Pipfile.lock
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3 changes: 2 additions & 1 deletion README.md
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Going beyond BEDMAP2 using a super resolution deep neural network.
Also a convenient [flat file](https://en.wikipedia.org/wiki/Flat-file_database) data repository for high resolution bed elevation datasets around Antarctica.

![GitHub top language](https://img.shields.io/github/languages/top/weiji14/deepbedmap.svg)
[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/ambv/black)
[![Codefresh build status](https://g.codefresh.io/api/badges/pipeline/weiji14_marketplace/weiji14%2Fdeepbedmap%2Fdeepbedmap?type=cf-1)](https://g.codefresh.io/public/accounts/weiji14_marketplace/pipelines/weiji14/deepbedmap/deepbedmap)
[![Dependabot Status](https://api.dependabot.com/badges/status?host=github&repo=weiji14/deepbedmap)](https://dependabot.com)
[![Libraries.io for GitHub](https://img.shields.io/librariesio/github/weiji14/deepbedmap.svg)](https://libraries.io/github/weiji14/deepbedmap)

![DeepBedMap Pipeline](https://yuml.me/diagram/scruffy;dir:LR/class/[Data|Highres/Lowres/Misc]->[Preprocessing|data_prep.ipynb],[Preprocessing]->[Model-Training|srgan_train.ipynb])

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