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1. UFISH-Team/U-FISH UFISH-Team/U-FISH Public

   Deep learning based spot detection for FISH images.

   Jupyter Notebook 21 5

2. Spatialspots Spatialspots Public

   This document explains how to use three functions to calculate kernel density estimation (KDE), Moran's I statistic, Correlation, Wasserstein distance.

   Python 3 1

3. MGEscore MGEscore Public

   CellType Definition by Marker Genes Expression

   Python 3 1

4. SpatiaInSituPlots SpatiaInSituPlots Public

   Spatial InSitu plot including gene expression and cell type

   Jupyter Notebook 4

5. MicroimageAnalysis MicroimageAnalysis Public

   measure fluorescence intensities of Hoechst and CENP-F in the nuclei

   Jupyter Notebook

6. SpatialImmunoCircle SpatialImmunoCircle Public

   Computing spatial variations around specific cell clusters in the immune microenvironment

   Jupyter Notebook 2