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1. VIcaller VIcaller Public

   A software to detect virome-wide integrations

   Perl 14 5

2. ERVcaller ERVcaller Public

   ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation s…

   Perl 13 4

3. VRscreen VRscreen Public

   This pipeline can be used to detect uniquely mapped paired-end viral reads

   Perl 1

4. VariabilityInTEs VariabilityInTEs Public

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5. TE-MPRA-and-phylogenetic-analysis TE-MPRA-and-phylogenetic-analysis Public

   R 1

6. RFAPtools RFAPtools Public

   We developed a bioinformatics pipeline termed RFAPtools to unambiguously discriminate between SNPs versus differences of homoeologous sequences in polyploid crops such as oilseed rape without a ref…

   Perl 1 1