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VIcaller.config
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VIcaller.config
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export PERL5LIB=/users/xchen/.cpan/build/
export PATH=$PATH:/users/xchen/VIcaller/Tools/bowtie2-2.2.7/
# human_genome = /users/xchen/VIcaller/Database/Human/human_genome_hg19/human_genome_hg19.fa
# human_genome_tophat = /users/xchen/VIcaller/Database/Human/human_genome_hg19/human_genome_hg19.fa
# virus_genome = /users/xchen/VIcaller/Database/Virus/virus_db_090217/virus_db_090217.fa
# virus_taxonomy = /users/xchen/VIcaller/Database/Virus/virus_db_090217/virus_db_090217.taxonomy
# vector_db = /users/xchen/VIcaller/Database/Vector/Vector.fa
# virus_list = /users/xchen/VIcaller/Database/Virus/virus_db_090217/virus_db_090217.virus_list
# cell_line = /users/xchen/VIcaller/Database/cell_line.list
# bowtie_d = /users/xchen/VIcaller/Tools/bowtie2-2.2.7/
# tophat_d = /users/xchen/VIcaller/Tools/tophat-2.1.1.Linux_x86_64/
# bwa_d = /users/xchen/VIcaller/Tools/bwa-master/
# samtools_d = /users/xchen/VIcaller/Tools/samtools-1.6/
# repeatmasker_d = /users/xchen/VIcaller/Tools/RepeatMasker/
# dust_d = /users/xchen/VIcaller/Tools/meme_4.11.1/
# NGSQCToolkit_d = /users/xchen/VIcaller/Tools/NGSQCToolkit_v2.3.3/
# fastuniq_d = /users/xchen/VIcaller/Tools/FastUniq/
# SE_MEI_d = /users/xchen/VIcaller/Tools/SE-MEI/
# hydra_d = /users/xchen/VIcaller/Tools/Hydra-Version-0.5.3/
# blat_d = /users/xchen/bin/x86_64/
# blastn_d = /users/xchen/VIcaller/Tools/ncbi-blast-2.2.30+-src/bin/