segmeter

What is segmeter

This is a tool for simulating interval data and benchmarking tool for interval retrieval.

Usage

segmeter currently supports two modes of operation: sim (e.g., simulate) and bench (e.g., benchmark). In the sim mode, segmeter generates a synthetic dataset of intervals and writes it to a file. In the bench mode, segmeter reads a dataset of intervals from a file and evaluates the performance of a given interval retrieval algorithm.

Docker

In additon, we provide a ready-to-use Docker container that has segmeter preconfigured.

Singularity

Segmeter is provided as docker container that can be used using docker pull yanglabinfo/segmeter.