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Update: Updated README.md with new links and corrected links
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mlweilert authored Jul 5, 2023
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## Setup for BPNet environment

The BPNet conda environment can be installed using the instructions found here: [https://github.com/kundajelab/chrombpnet/tree/pre-release]. There are 2 environments: 1 with and 1 without a GPU capability. If you choose to install the GPU-compatible BPNet environment on an Nvidia GPU (we trained on a NVIDIA® TITAN RTX GPU), then you will need the appropriate drivers:
The BPNet conda environment can be installed using the instructions found here: [https://github.com/kundajelab/bpnet]. There are 2 environments: 1 with and 1 without a GPU capability. If you choose to install the GPU-compatible BPNet environment on an Nvidia GPU (we trained on a NVIDIA® TITAN RTX GPU), then you will need the appropriate drivers:

+ CUDA v9.0
+ cuDNN v7.0.5

## Setup for ChromBPNet environment

The ChromBPNet conda environment can be installed using the instructions found here: [https://github.com/mlweilert/chrombpnet-lite](https://github.com/kundajelab/chrombpnet/tree/pre-release). If you choose to install the GPU-compatible ChromBPNet environment on an Nvidia GPU (we trained on a NVIDIA® TITAN RTX GPU), then you will need the appropriate drivers:
The ChromBPNet conda environment can be installed using the instructions found here: [https://github.com/kundajelab/chrombpnet/tree/pre-release]. If you choose to install the GPU-compatible ChromBPNet environment on an Nvidia GPU (we trained on a NVIDIA® TITAN RTX GPU), then you will need the appropriate drivers:

+ CUDA v11.0
+ cuDNN v8.3.0
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