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Refactoring the viz module to a more modular design. #652

Refactoring the viz module to a more modular design.

Refactoring the viz module to a more modular design. #652

Workflow file for this run

---
name: Coverage test
defaults:
run:
shell: bash
env:
CFLAGS: -Og
on:
pull_request:
# all pull-requests on to main
branches: [main]
schedule:
# only once every 4 days
# We can always force run this.
- cron: '37 10 */4 * *'
workflow_dispatch:
inputs:
branch:
description: 'Which branch to test'
required: false
default: 'main'
marks:
description: 'Which marks to test'
required: false
default: ''
jobs:
# Define a few jobs that can be runned
check_schedule:
if: ${{ github.event_name == 'schedule' }}
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
ref: '${{ github.event.inputs.branch }}'
- run: test -n $(git rev-list --after="1 week" --max-count=1 ${{ github.sha }})
test_runs:
needs: [check_schedule]
if: ${{ always() && (contains(needs.*.result, 'success') || contains(needs.*.result, 'skipped')) }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest]
python-version: ['3.8', '3.11']
steps:
- name: Checkout sisl
uses: actions/checkout@v4
with:
ref: '${{ github.event.inputs.branch }}'
# The files submodule is required for tests purposes
submodules: true
# the 'files' submodule uses lfs
lfs: true
- name: Print-out commit information
run: |
echo "branch: ${{ github.event.inputs.branch }}"
echo "hash: ${{ github.sha }}"
echo "python-version: ${{ matrix.python-version }}"
# This should generally not be required, but in the end it is just easier
- name: Ensure system dependencies
run: |
sudo apt-get update
sudo apt-get install gcc gfortran
- name: Python installation
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install sisl + dependencies
run: |
python -m pip install --progress-bar=off --upgrade pip
python -m pip install --progress-bar=off Cython "scikit-build-core[pyproject]"
python -m pip install --progress-bar=off -r ci/requirements.txt -r ci/requirements-viz.txt -r requirements.txt
CC=gcc FC=gfortran python -m pip install -vvv .
- name: Running sisl tests
env:
SISL_FILES_TESTS: ${{ github.workspace }}/files/tests
run: |
# This needs to be done in a separate folder
# Otherwise the import will try to use the one in the current folder
mkdir sisl-test-dir ; cd sisl-test-dir
if [[ "${{ github.event.inputs.marks }}" == "" ]]; then
ADD_FLAGS=""
else
ADD_FLAGS="-m ${{ github.event.inputs.marks }}"
fi
# --cov forces the reading of .coveragerc
ADD_TOOLS=""
for tool in btd models ; do
ADD_TOOLS="$ADD_TOOLS sisl_toolbox.$tool"
done
for tool in atom minimizer ; do
ADD_TOOLS="$ADD_TOOLS sisl_toolbox.siesta.$tool"
done
for tool in poisson ; do
ADD_TOOLS="$ADD_TOOLS sisl_toolbox.transiesta.$tool"
done
py.test -vv -rX --cov --cov-report term-missing --cov-report xml --cov-config=../.coveragerc $ADD_FLAGS --pyargs sisl $ADD_TOOLS
#cp coverage.xml ../
- name: Upload code-coverage
if: ${{ github.event.inputs.marks == '' }}
uses: codecov/codecov-action@v3
with:
directory: ./sisl-test-dir/
verbose: true