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@Bioinfo-Tools

Bioinformatic Tools for sequence analysis

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  1. PANGEA-plus PANGEA-plus Public

    A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis

    C 5 1

  2. NCBI-taxcollector NCBI-taxcollector Public

    Perl 3 2

  3. merge_fastq_files.pl merge_fastq_files.pl Public

    A simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.

    Perl 2 1

  4. ncbitc_functions ncbitc_functions Public

    Forked from mvneves/ncbitaxcollector

    A tool for searching NCBI taxonomy information.

    C 1

  5. MPI-blastn MPI-blastn Public

    A high performance parallel version of nucleotide BLAST+ for sequence search

    C 1 2

  6. MPI-blastp MPI-blastp Public

    High performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.

    C 1

Repositories

Showing 10 of 10 repositories
  • merge_abundances Public
    Bioinfo-Tools/merge_abundances’s past year of commit activity
    R 0 0 0 0 Updated Apr 17, 2017
  • classify_blast_results_from_PFAM_database Public

    This R script is made to convert the PFAM IDs from Blast result tables to interpretable descriptions and molecular function names of proteins

    Bioinfo-Tools/classify_blast_results_from_PFAM_database’s past year of commit activity
    R 0 0 0 0 Updated Apr 17, 2017
  • merge_fastq_files.pl Public

    A simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.

    Bioinfo-Tools/merge_fastq_files.pl’s past year of commit activity
    Perl 2 1 0 0 Updated Apr 16, 2017
  • SILVA-taxcollector Public

    A tool for converting blast results to taxonomic information, useful for generating OTU tables. This version supports blast results acquired using SILVA 16S/18S database.

    Bioinfo-Tools/SILVA-taxcollector’s past year of commit activity
    C 0 GPL-3.0 1 0 0 Updated Sep 15, 2014
  • trim_phylip_alignment Public

    A simple script for trimming multiple sequence alignments in phylip format

    Bioinfo-Tools/trim_phylip_alignment’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Sep 5, 2014
  • NCBI-taxcollector Public
    Bioinfo-Tools/NCBI-taxcollector’s past year of commit activity
    Perl 3 2 1 0 Updated May 5, 2014
  • PANGEA-plus Public

    A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis

    Bioinfo-Tools/PANGEA-plus’s past year of commit activity
    C 5 1 0 0 Updated Feb 26, 2014
  • MPI-blastn Public

    A high performance parallel version of nucleotide BLAST+ for sequence search

    Bioinfo-Tools/MPI-blastn’s past year of commit activity
    C 1 2 1 0 Updated Feb 12, 2014
  • MPI-blastp Public

    High performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.

    Bioinfo-Tools/MPI-blastp’s past year of commit activity
    C 0 1 0 0 Updated Sep 23, 2012
  • ncbitc_functions Public Forked from mvneves/ncbitaxcollector

    A tool for searching NCBI taxonomy information.

    Bioinfo-Tools/ncbitc_functions’s past year of commit activity
    C 1 2 0 0 Updated Jun 20, 2012

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