Repositories list

• merge_abundances

  Public
  R

  •0•0•0•0•Updated Apr 17, 2017Apr 17, 2017

• classify_blast_results_from_PFAM_database

  Public
  This R script is made to convert the PFAM IDs from Blast result tables to interpretable descriptions and molecular function names of proteins

  R

  •0•0•0•0•Updated Apr 17, 2017Apr 17, 2017

• merge_fastq_files.pl

  Public
  A simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.

  Perl

  •1•2•0•0•Updated Apr 16, 2017Apr 16, 2017

• SILVA-taxcollector

  Public
  A tool for converting blast results to taxonomic information, useful for generating OTU tables. This version supports blast results acquired using SILVA 16S/18S database.

  C

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 15, 2014Sep 15, 2014

• trim_phylip_alignment

  Public
  A simple script for trimming multiple sequence alignments in phylip format

  Perl

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 5, 2014Sep 5, 2014

• NCBI-taxcollector

  Public
  Perl

  •2•3•1•0•Updated May 5, 2014May 5, 2014

• PANGEA-plus

  Public
  A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis

  C

  •1•5•0•0•Updated Feb 26, 2014Feb 26, 2014

• MPI-blastn

  Public
  A high performance parallel version of nucleotide BLAST+ for sequence search

  C

  •2•1•1•0•Updated Feb 12, 2014Feb 12, 2014

• MPI-blastp

  Public
  High performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.

  C

  •1•0•0•0•Updated Sep 23, 2012Sep 23, 2012

• ncbitc_functions

  Public
  A tool for searching NCBI taxonomy information.

  C

  •2•1•0•0•Updated Jun 20, 2012Jun 20, 2012