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@Biomedical-Imaging-Group

Biomedical Imaging Group

The BIG pursues research on the development of new algorithms and mathematical tools for the advanced processing of medical and biological images

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  1. DeepSplines DeepSplines Public

    A learnable linear spline module (PyTorch)

    Python

  2. GlobalBioIm GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    MATLAB 78 36

  3. DeconvolutionLab2 DeconvolutionLab2 Public

    Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

    Java 51 15

  4. Generating-Sparse-Processes Generating-Sparse-Processes Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 20 repositories
  • GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    Biomedical-Imaging-Group/GlobalBioIm’s past year of commit activity
    MATLAB 78 GPL-3.0 36 8 (1 issue needs help) 0 Updated Nov 15, 2024
  • IPLABs-distribution-2024 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2024’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 7, 2024
  • OrientationJ Public

    ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

    Biomedical-Imaging-Group/OrientationJ’s past year of commit activity
    Java 24 GPL-3.0 8 5 0 Updated Oct 21, 2024
  • EDF-Extended-Depth-of-Field Public

    An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

    Biomedical-Imaging-Group/EDF-Extended-Depth-of-Field’s past year of commit activity
    Java 11 GPL-3.0 5 0 0 Updated Oct 3, 2024
  • Biomedical-Imaging-Group.github.io Public
    Biomedical-Imaging-Group/Biomedical-Imaging-Group.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 30, 2024
  • DeconvolutionLab2.github.io Public

    DeconvolutionLab2

    Biomedical-Imaging-Group/DeconvolutionLab2.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 30, 2024
  • DeepSplines Public

    A learnable linear spline module (PyTorch)

    Biomedical-Imaging-Group/DeepSplines’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 6, 2024
  • IPLABs-distribution-2023 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2023’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated May 23, 2024
  • SingleCellClassifier Public

    Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

    Biomedical-Imaging-Group/SingleCellClassifier’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 1 0 0 Updated Jun 30, 2023
  • Continuous_FRC_SMLM Public

    Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

    Biomedical-Imaging-Group/Continuous_FRC_SMLM’s past year of commit activity
    Python 5 MIT 2 0 0 Updated Jun 5, 2023
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