Repositories list

• GlobalBioIm

  Public
  A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

  image-reconstructionlinear-algebraimage-processing+ 2inverse-problemsmatlab-library

  MATLAB

  •

  GNU General Public License v3.0

  •36•78•8•0•Updated Nov 15, 2024Nov 15, 2024

• IPLABs-distribution-2024

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Nov 7, 2024Nov 7, 2024

• OrientationJ

  Public
  ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

  directionalitystructure-tensororientation+ 2imagej-pluginsvector-field

  Java

  •

  GNU General Public License v3.0

  •8•24•5•0•Updated Oct 21, 2024Oct 21, 2024

• EDF-Extended-Depth-of-Field

  Public
  An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

  Java

  •

  GNU General Public License v3.0

  •5•11•0•0•Updated Oct 3, 2024Oct 3, 2024

• Biomedical-Imaging-Group.github.io

  Public
  HTML

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• DeconvolutionLab2.github.io

  Public
  DeconvolutionLab2

  HTML

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• DeepSplines

  Public
  A learnable linear spline module (PyTorch)

  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 6, 2024Jun 6, 2024

• IPLABs-distribution-2023

  Public
  Jupyter Notebook

  •1•1•0•0•Updated May 23, 2024May 23, 2024

• SingleCellClassifier

  Public
  Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated Jun 30, 2023Jun 30, 2023

• Continuous_FRC_SMLM

  Public
  Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

  Python

  •

  MIT License

  •2•5•0•0•Updated Jun 5, 2023Jun 5, 2023

• Interactive-Cell-Lineage-Tracer

  Public
  ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage

  Java

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

• CryoEM-Joint-Refinement

  Public
  Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

  MATLAB

  •1•2•0•0•Updated Sep 16, 2022Sep 16, 2022

• interactive-kit

  Public
  A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

  educationepflimage-processing+ 5ipywidgetsvisualizationpythonjupyter-notebookmatplotlib

  Python

  •

  MIT License

  •6•11•3•1•Updated Mar 31, 2022Mar 31, 2022

• Steer-n-Detect

  Public
  ImageJ plugin - Steerable Template Detector

  Java

  •

  GNU General Public License v3.0

  •0•6•0•0•Updated Nov 19, 2021Nov 19, 2021

• image-access

  Public
  A class for the didactic implementation of image-processing algorithms in JavaScript.

  javascripteducationepfl+ 2jupyter-notebookimage-processing

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •4•9•2•0•Updated Sep 27, 2021Sep 27, 2021

• PureDenoise

  Public
  Java

  •

  GNU General Public License v3.0

  •3•4•0•0•Updated Dec 3, 2020Dec 3, 2020

• Multi-Kernel-Regression-gTV-

  Public
  The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"

  MATLAB

  •3•4•0•0•Updated Jul 16, 2020Jul 16, 2020

• Generating-Sparse-Processes

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Sep 27, 2019Sep 27, 2019

• PSFGenerator

  Public
  A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)

  Java

  •

  GNU General Public License v3.0

  •4•13•2•0•Updated Jul 16, 2019Jul 16, 2019

• DeconvolutionLab2

  Public
  Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

  algorithmsmicroscopy3d+ 2deconvolutionimages-plugins

  Java

  •

  GNU General Public License v3.0

  •15•51•5•1•Updated Mar 9, 2019Mar 9, 2019