Fix: Fix AR algo

neurots/generate/orientations.py

@@ -212,7 +212,7 @@ def _mode_uniform(self, _, tree_type):
             [sample.sample_spherical_unit_vectors(rng=self._rng) for _ in range(n_orientations)]
         )
 
-    def _mode_normal_pia_constraint(self, values_dict, tree_type):
+    def _mode_normal_pia_constraint(self, values_dict, tree_type, max_tries=100):
         """Returns orientations using normal/exp distribution along a direction.
 
         The `direction` value should be a dict with two entries: `mean` and `std`. The mean is the
@@ -233,11 +233,13 @@ def _mode_normal_pia_constraint(self, values_dict, tree_type):
             n_orientations = 1
 
         angles = []
-        for _ in range(n_orientations):
+
+        def propose(_):
             means = values_dict["direction"]["mean"]
             means = means if isinstance(means, list) else [means]
             stds = values_dict["direction"]["std"]
             stds = stds if isinstance(stds, list) else [stds]
+
             thetas = []
             for mean, std in zip(means, stds):
                 if mean == 0:
@@ -249,9 +251,24 @@ def _mode_normal_pia_constraint(self, values_dict, tree_type):
                     thetas.append(np.clip(self._rng.normal(mean, std), 0, np.pi))
 
             phis = self._rng.uniform(0, 2 * np.pi, len(means))
-            angles += spherical_angles_to_pia_orientations(
+            return spherical_angles_to_pia_orientations(
                 phis, thetas, self._context.get("y_rotation", None)
-            ).tolist()
+            ).tolist()[0]
+
+        if self._context is not None and self._context.get("constraints", []):  # pragma: no cover
+
+            def prob(proposal):
+                p = 1.0
+                for constraint in self._context["constraints"]:
+                    if "trunk_prob" in constraint:
+                        p = min(p, constraint["trunk_prob"](proposal, self._soma.center))
+                return p
+
+            for _ in range(n_orientations):
+                angles.append(accept_reject(propose, prob, self._rng, max_tries=max_tries))
+        else:
+            for _ in range(n_orientations):
+                angles.append(propose(_))
         return np.array(angles)
 
     def _mode_pia_constraint(self, _, tree_type):
@@ -305,7 +322,7 @@ def prob(proposal):
             if self._context.get("constraints", []):  # pragma: no cover
                 for constraint in self._context["constraints"]:
                     if "trunk_prob" in constraint:
-                        p *= constraint["trunk_prob"](proposal, self._soma.center)
+                        p = min(p, constraint["trunk_prob"](proposal, self._soma.center))
             return p
 
         return accept_reject(propose, prob, self._rng, max_tries=max_tries)

neurots/generate/section.py

@@ -22,7 +22,7 @@
 
 # default parameters for accept/reject
 DEFAULT_MAX_TRIES = 50
-DEFAULT_RANDOMNESS_INCREASE = 0.5
+DEFAULT_RANDOMNESS_INCREASE = 1.2
 
 
 class SectionGrower:
@@ -94,13 +94,11 @@ def _propose(self, extra_randomness=0, add_random_component=True):
             add_random_component (bool): add a random component to the direction
         """
         direction = self.params.targeting * self.direction + self.params.history * self.history()
-
-        if add_random_component:
+        if add_random_component or extra_randomness > 0.0:
             random_component = self.params.randomness * get_random_point(random_generator=self._rng)
             if extra_randomness > 0:  # pragma: no cover
                 random_component *= extra_randomness
             direction += random_component
-
         return direction / vectorial_norm(direction)
 
     def next_point(self, add_random_component=True, extra_randomness=0):
@@ -117,7 +115,7 @@ def next_point(self, add_random_component=True, extra_randomness=0):
             def prob(*args, **kwargs):
                 p = 1.0
                 for constraint in self.context["constraints"]:
-                    p *= constraint["section_prob"](*args, **kwargs)
+                    p = min(p, constraint["section_prob"](*args, **kwargs))
                 return p
 
             max_tries = -1

neurots/utils.py

@@ -102,7 +102,7 @@ def accept_reject(
     probability,
     rng,
     max_tries=50,
-    randomness_increase=0.5,
+    randomness_increase=1.2,
     **probability_kwargs,
 ):
     """Generic accept/reject algorithm.
@@ -122,7 +122,7 @@ def accept_reject(
     best_proposal = None
     best_p = -1.0
     while n_tries < max_tries:
-        proposal = propose(n_tries * randomness_increase)
+        proposal = propose((1 + n_tries) * randomness_increase)
         _prob = probability(proposal, **probability_kwargs)
         if _prob == 1.0:
             # this ensures we don't change rng for the tests, but its not really needed
@@ -134,7 +134,6 @@ def accept_reject(
         if _prob > best_p:
             best_p = _prob
             best_proposal = proposal
-
         n_tries += 1
     warnings.warn("We could not sample from distribution, we take best sample.")
     return best_proposal