Local containers

.gitignore

@@ -59,3 +59,4 @@ hl7-parser/.gradle/*
 *.env
 
 .vscode/*
+application-local.yaml

cdaschema/gradle/wrapper/gradle-wrapper.properties

@@ -1,6 +1,6 @@
 #Tue Sep 19 13:01:35 MST 2023
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-8.0-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.10.1-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists

containers/db/.gitignore

@@ -0,0 +1 @@
+.backups

containers/db/initialize/restore.d/00-restore.sql

@@ -0,0 +1,81 @@
+use [master];
+go
+
+-- Following Script will restore the DATABASE FROM "/var/opt/database/restore" Backups folder
+-- All database Data files/log files go to "/var/opt/mssql/data". User can Modify the folder where they need to....
+
+---------------------------------------------------------------------------------------------------
+--  NBS_ODSE
+---------------------------------------------------------------------------------------------------
+
+RESTORE DATABASE [NBS_ODSE] FROM
+DISK = N'/var/opt/database/initialize/restore.d/NBS_ODSE.bak'
+WITH  FILE = 1,
+MOVE N'ODS_PRIMARY_DATA01' TO N'/var/opt/mssql/data/Nbs_odse.mdf',
+MOVE N'ODS_PRIMARY_DAT02' TO N'/var/opt/mssql/data/nbs_odse1.mdf',
+MOVE N'ODS_ACTS01' TO N'/var/opt/mssql/data/nbs_odse2.mdf',
+MOVE N'ODS_ACTS02' TO N'/var/opt/mssql/data/nbs_odse3.mdf',
+MOVE N'ODS_ENTITIES01' TO N'/var/opt/mssql/data/nbs_odse4.mdf',
+MOVE N'ODS_ENTITIES02' TO N'/var/opt/mssql/data/nbs_odse5.mdf',
+MOVE N'ODS_ENTITIES_LOCATOR01' TO N'/var/opt/mssql/data/nbs_odse6.mdf',
+MOVE N'ODS_ENTITIES_LOCATOR02' TO N'/var/opt/mssql/data/nbs_odse7.mdf',
+MOVE N'ODS_HIST01' TO N'/var/opt/mssql/data/nbs_odse8.mdf',
+MOVE N'ODS_HIST02' TO N'/var/opt/mssql/data/nbs_odse9.mdf',
+MOVE N'ODS_INDEX01' TO N'/var/opt/mssql/data/nbs_odse10.mdf',
+MOVE N'ODS_INDEX02' TO N'/var/opt/mssql/data/nbs_odse11.mdf',
+MOVE N'ODS_REPORT01' TO N'/var/opt/mssql/data/nbs_odse12.mdf',
+MOVE N'ODS_REPORT02' TO N'/var/opt/mssql/data/nbs_odse13.mdf',
+MOVE N'ODS_TEXTFILE01' TO N'/var/opt/mssql/data/nbs_odse14.mdf',
+MOVE N'ODS_TEXTFILE02' TO N'/var/opt/mssql/data/nbs_odse15.mdf',
+MOVE N'ODS_PARTICIPATION01' TO N'/var/opt/mssql/data/nbs_odse16.mdf',
+MOVE N'ODS_PARTICIPATION02' TO N'/var/opt/mssql/data/nbs_odse17.mdf',
+MOVE N'PRIMARY_LOG1' TO N'/var/opt/mssql/data/nbs_odse_1.ldf',  NOUNLOAD,  STATS = 10
+GO
+
+EXEC dbo.sp_dbcmptlevel @dbname=N'NBS_ODSE', @new_cmptlevel=120
+GO
+
+---------------------------------------------------------------------------------------------------
+--  NBS_SRTE
+---------------------------------------------------------------------------------------------------
+
+RESTORE DATABASE [NBS_SRTE] FROM
+DISK = N'/var/opt/database/initialize/restore.d/NBS_SRTE.bak'
+WITH  FILE = 1,
+MOVE N'nbs_srte_generic113_Data' TO N'/var/opt/mssql/data/nbs_srte.mdf',
+MOVE N'nbs_srte_generic113_Log' TO N'/var/opt/mssql/data/nbs_srte.ldf',  NOUNLOAD,  STATS = 10
+GO
+
+EXEC dbo.sp_dbcmptlevel @dbname=N'NBS_SRTE', @new_cmptlevel=120
+GO
+
+---------------------------------------------------------------------------------------------------
+--  NBS_MSGOUTE
+---------------------------------------------------------------------------------------------------
+
+RESTORE DATABASE [NBS_MSGOUTE] FROM  DISK = N'/var/opt/database/initialize/restore.d/NBS_MSGOUTE.bak' WITH  FILE = 1,
+MOVE N'MSGOUT_PRIMARY_DATA01' TO N'/var/opt/mssql/data/nbs_msgoute.mdf',
+MOVE N'MSGOUT_PRIMARY_DATA02' TO N'/var/opt/mssql/data/nbs_msgoute_1.mdf',
+MOVE N'MSGOUT_TEXTFILE01' TO N'/var/opt/mssql/data/nbs_msgoute_2.mdf',
+MOVE N'MSGOUT_TEXTFILE02' TO N'/var/opt/mssql/data/nbs_msgoute_3.mdf',
+MOVE N'MSGOUT_APP01' TO N'/var/opt/mssql/data/nbs_msgoute_4.mdf',
+MOVE N'MSGOUT_APP02' TO N'/var/opt/mssql/data/nbs_msgoute_5.mdf',
+MOVE N'PRIMARY_LOG1' TO N'/var/opt/mssql/data/nbs_msgoute_log.ldf',
+NOUNLOAD,  STATS = 10
+GO
+
+EXEC dbo.sp_dbcmptlevel @dbname=N'NBS_MSGOUTE', @new_cmptlevel=120
+GO
+
+---------------------------------------------------------------------------------------------------
+--  RDB
+---------------------------------------------------------------------------------------------------
+
+RESTORE DATABASE [RDB] FROM  DISK = N'/var/opt/database/initialize/restore.d/RDB.bak' WITH  FILE = 1,
+MOVE N'RDB' TO N'/var/opt/mssql/data/rdb_data.mdf',
+MOVE N'RDB_log' TO N'/var/opt/mssql/data/rdb_log.ldf',  NOUNLOAD,  STATS = 10
+GO
+
+
+EXEC dbo.sp_dbcmptlevel @dbname=N'RDB', @new_cmptlevel=120
+GO

containers/db/initialize/restore.d/01-database-user-permissions.sql

@@ -0,0 +1,81 @@
+use [master];
+
+IF  EXISTS (SELECT * FROM sys.server_principals WHERE name = N'nbs_ods') 
+    DROP LOGIN [nbs_ods];
+
+create login nbs_ods with password = 'ods', default_database = [master], check_expiration=OFF, check_policy=OFF;
+
+IF  EXISTS (SELECT * FROM sys.server_principals WHERE name = N'SRTE_ADMIN') 
+    DROP LOGIN [SRTE_ADMIN];
+
+CREATE LOGIN srte_admin WITH PASSWORD = 'admin',DEFAULT_DATABASE = [master], CHECK_EXPIRATION=OFF, CHECK_POLICY=OFF;
+
+IF  EXISTS (SELECT * FROM sys.server_principals WHERE name = N'nbs_rdb') 
+    DROP LOGIN [nbs_rdb];
+
+CREATE LOGIN nbs_rdb WITH PASSWORD = 'rdb',DEFAULT_DATABASE = [master], CHECK_EXPIRATION=OFF, CHECK_POLICY=OFF;
+
+
+GO 
+
+---------------------------------------------------------------------------------------------------
+use NBS_MSGoute;
+
+if  exists (select * from sys.database_principals where name = N'nbs_ods')
+  drop user [nbs_ods];
+go
+
+create user nbs_ods for login nbs_ods;  
+
+exec sp_addrolemember 'db_owner', 'nbs_ods';
+
+go  
+
+---------------------------------------------------------------------------------------------------
+use NBS_ODSE;
+
+if  exists (select * from sys.database_principals where name = N'nbs_ods')
+  drop user [nbs_ods];
+go
+
+create user nbs_ods for login nbs_ods;  
+
+exec sp_addrolemember 'db_owner', 'nbs_ods';
+
+go  
+
+---------------------------------------------------------------------------------------------------
+use [NBS_SRTE];
+
+if  exists (select * from sys.database_principals where name = N'nbs_ods')
+  drop user [nbs_ods];
+go
+
+create user nbs_ods for login nbs_ods;  
+
+exec sp_addrolemember 'db_owner', 'nbs_ods';
+
+go  
+
+if  exists (select * from sys.database_principals where name = N'srte_admin')
+  drop user [srte_admin];
+go
+
+create user srte_admin for login srte_admin;  
+
+exec sp_addrolemember 'db_owner', 'srte_admin';
+
+go  
+
+---------------------------------------------------------------------------------------------------
+use [rdb];
+
+if  exists (select * from sys.database_principals where name = N'nbs_rdb')
+  drop user [nbs_rdb];
+go
+
+create user nbs_rdb for login nbs_rdb;  
+
+exec sp_addrolemember 'db_owner', 'nbs_rdb';
+
+go  

containers/db/initialize/restore.d/02-create-application-users.sql

@@ -0,0 +1,121 @@
+use NBS_ODSE;
+
+declare @user   varchar (100)     = 'superuser'
+declare @first  varchar(100)      = 'Ariella'
+declare @last   varchar(100)      = 'Kent'
+declare @permissions varchar(100) = 'superuser'
+
+---------------------------------------------------------------------------------------------------
+declare @next_id bigint
+declare @changedBy  bigint        = -1;
+declare @changedOn  datetime      = getDate();
+declare @guest      char          = 'F'
+declare @read_only  char          = 'T'
+
+-- find the NBS Class
+declare @class varchar(20);
+select 
+    @class = config_value
+from [nbs_configuration]
+where config_key = 'NBS_CLASS_CODE'
+
+IF NOT EXISTS (SELECT 1 FROM [dbo].[Auth_user] where [user_id] = @user)
+begin
+
+  begin transaction
+
+    --  get the next NBS identifier
+    select 
+        @next_id = seed_value_nbr
+    from local_uid_generator
+    where class_name_cd = @class  
+
+    --  Add the user
+    insert into Auth_user (
+        nedss_entry_id,
+        user_id,
+        user_type,
+        user_first_nm,
+        user_last_nm,
+        master_sec_admin_ind,
+        prog_area_admin_ind,
+        user_comments,
+        add_user_id,
+        add_time,
+        last_chg_user_id,
+        last_chg_time,
+        record_status_cd,
+        record_status_time    
+    ) values (
+        @next_id,
+        @user,
+        'internalUser',
+        @first,
+        @last,
+        'F',
+        'F',
+        'Auto-generated user.',
+        @changedBy,
+        @changedOn,
+        @changedBy,
+        @changedOn,
+        'ACTIVE',
+        @changedOn
+    )
+
+    -- update NBS identifier
+    update local_uid_generator
+        set seed_value_nbr = @next_id + 1
+    where class_name_cd = @class;
+
+commit transaction
+
+---------------------------------------------------------------------------------------------------
+-- Add permissions to all Jurisdictions
+
+  ;with users (identifier) as (
+      select 
+          auth_user_uid 
+      from Auth_user 
+      where user_id in (
+          @user
+      )
+  )
+  insert into Auth_user_role (
+      auth_user_uid,
+      auth_role_nm,
+      prog_area_cd,
+      jurisdiction_cd,
+      auth_perm_set_uid,
+      role_guest_ind,
+      read_only_ind,
+      disp_seq_nbr,
+      add_time,
+      add_user_id,
+      last_chg_time,
+      last_chg_user_id,
+      record_status_cd,
+      record_status_time
+  )
+  select 
+      [user].[identifier]                 as [auth_user_uid],
+      [permission_set].perm_set_nm        as [auth_role_nm],
+      [program_area].[prog_area_cd],
+      'ALL'                               as [jurisdiction_cd],
+      [permission_set].auth_perm_set_uid,
+      @guest                              as [role_guest_ind],
+      @read_only                          as [read_only_ind],
+      0                                   as [disp_seq_nbr],
+      @changedOn                          as [add_time],
+      @changedBy                          as [add_user_id],
+      @changedOn                          as [last_chg_time],
+      @changedBy                          as [last_chg_user_id],
+      'ACTIVE'                            as [record_status_cd],
+      @changedOn                          as [record_status_time]
+  from Auth_perm_set [permission_set],
+      users [user],
+      NBS_SRTE..Program_area_code [program_area]
+
+  where   [permission_set].perm_set_nm    = @permissions
+
+end

containers/db/initialize/restore.d/03-create-data-ingestion-db.sql

@@ -0,0 +1,3 @@
+CREATE DATABASE NBS_DATAINGEST;
+
+GO

deduplication/db/initialize/restore.d/00-initial.sql → containers/db/initialize/restore.d/04-create-deduplication-db.sql

@@ -1,31 +1,31 @@
-USE [master];
-GO
-
-CREATE DATABASE deduplication;
-GO
-
-USE [deduplication];
-GO
-
-
-CREATE TABLE data_element_configuration (
-	id int IDENTITY (1,1) PRIMARY KEY,
-	configuration NVARCHAR(MAX) NOT NULL,
-	add_time datetime NOT NULL default(current_timestamp));
-GO
-
-CREATE TABLE match_configuration (
-	id int IDENTITY (1,1) PRIMARY KEY,
-	configuration NVARCHAR(MAX) NOT NULL,
-	add_time datetime NOT NULL default(current_timestamp));
-GO
-
-CREATE TABLE nbs_mpi_mapping (
-    id bigint,
-    person_uid bigint,
-    person_parent_uid bigint,
-    mpi_person uniqueidentifier,
-    mpi_patient uniqueidentifier,
-    status varchar,
-    PRIMARY KEY ([id])
+USE [master];
+GO
+
+CREATE DATABASE deduplication;
+GO
+
+USE [deduplication];
+GO
+
+
+CREATE TABLE data_element_configuration (
+	id int IDENTITY (1,1) PRIMARY KEY,
+	configuration NVARCHAR(MAX) NOT NULL,
+	add_time datetime NOT NULL default(current_timestamp));
+GO
+
+CREATE TABLE match_configuration (
+	id int IDENTITY (1,1) PRIMARY KEY,
+	configuration NVARCHAR(MAX) NOT NULL,
+	add_time datetime NOT NULL default(current_timestamp));
+GO
+
+CREATE TABLE nbs_mpi_mapping (
+    id bigint,
+    person_uid bigint,
+    person_parent_uid bigint,
+    mpi_person uniqueidentifier,
+    mpi_patient uniqueidentifier,
+    status varchar,
+    PRIMARY KEY ([id])
 );