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rename latent_model_model to latent_model #112

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Mar 5, 2024
Merged

rename latent_model_model to latent_model #112

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8 changes: 4 additions & 4 deletions EpiAware/src/models.jl
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Original file line number Diff line number Diff line change
@@ -1,16 +1,16 @@
@model function make_epi_aware(y_t,
time_steps;
epi_model::AbstractEpiModel,
latent_model_model::AbstractLatentModel,
latent_model::AbstractLatentModel,
observation_model::AbstractObservationModel,
pos_shift = 1e-6)
#Latent process
@submodel latent_model, latent_model_aux = generate_latent(
latent_model_model,
@submodel Z_t, latent_model_aux = generate_latent(
latent_model,
time_steps)

#Transform into infections
@submodel I_t = generate_latent_infs(epi_model, latent_model)
@submodel I_t = generate_latent_infs(epi_model, Z_t)

#Predictive distribution of ascerted cases
@submodel generated_y_t, generated_y_t_aux = generate_observations(observation_model,
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6 changes: 3 additions & 3 deletions EpiAware/test/test_models.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@

# Create full epi model and sample from it
test_mdl = make_epi_aware(y_t, time_horizon; epi_model = epi_model,
latent_model_model = rwp,
latent_model = rwp,
observation_model = obs_model, pos_shift)
gen = generated_quantities(test_mdl, rand(test_mdl))

Expand Down Expand Up @@ -63,7 +63,7 @@ end
test_mdl = make_epi_aware(y_t,
time_horizon;
epi_model = epi_model,
latent_model_model = rwp,
latent_model = rwp,
observation_model = obs_model,
pos_shift)

Expand Down Expand Up @@ -102,7 +102,7 @@ end
test_mdl = make_epi_aware(y_t,
time_horizon;
epi_model = epi_model,
latent_model_model = rwp,
latent_model = rwp,
observation_model = obs_model,
pos_shift)

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