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patch for type issue with --coverage on Seqera Cloud #173

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patch for type issue with --coverage on Seqera Cloud #173

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2 changes: 1 addition & 1 deletion main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ nextflow.enable.dsl = 2
WorkflowMain.initialise(workflow, params, log)

//Check coverage is above its threshold
if (params.coverage < 30) { exit 1, 'The minimum coverage allowed for QA/QC purposes is 30 and is the default. Please choose a value >=30.' }
if (params.coverage.toInteger() < 30) { exit 1, 'The minimum coverage allowed for QA/QC purposes is 30 and is the default. Please choose a value >=30.' }
//Check path of kraken2db
if (params.kraken2db == null) { exit 1, 'Input path to kraken2db not specified!' }

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4 changes: 2 additions & 2 deletions nextflow_schema.json
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Expand Up @@ -83,9 +83,9 @@
"fa_icon": "fas fa-folder-open"
},
"coverage": {
"type": "string",
"type": "integer",
"description": "If you want to increase the coverage cut off >30x use --coverage (ex. --coverage 40)",
"default": "30",
"default": 30,
"fa_icon": "fas fa-hashtag"
},
"busco_db_path": {
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