Discussions

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  Help, How do I add TF information to a Peak-to-Gene DataFrame?

  davidlyon3 asked Nov 28, 2024 in Questions / Documentation · Unanswered

  

  

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  Generate Releases and version more frequently

  mfansler started Oct 11, 2024 in Feature Requests

  

  

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  devtools is an overdependency

  mfansler started Nov 15, 2024 in Feature Requests

  

  

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  Specify groupBy column order in plotPeak2GeneHeatmap()

  pseudacriscrucifer asked Dec 14, 2023 in Questions / Documentation · Unanswered

  

  

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  WNN

  summus-kong started Nov 7, 2024 in General

  

  

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  Error: Image must have at least 1 frame to write a bitmap in plotMarkerHeatmap

  khsjh asked May 16, 2023 in Questions / Documentation · Unanswered

  

  

  

  

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  Overlay public scRNA-seq datasets onto your embedding

  connorrogerson asked Oct 15, 2024 in Questions / Documentation · Unanswered

  

  

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  Contenerized ArchR for HPC

  drowsygoat started Aug 5, 2024 in General

  

  

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  How to integrate the snRNA seq data generated by scanpy with the snATAC seq data generated by ArchR ?

  danli349 started Oct 1, 2024 in General

  

  

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  convert archr project to seurat v4

  A-legac45 asked Sep 26, 2024 in Questions / Documentation · Unanswered

  

  

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  How to extract gene-cell Gene Score matrix?

  chaiepi started Sep 9, 2024 in General

  

  

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  Updating Sample Names in Existing Arrow Files for ArchR Project

  aa20g217 asked Sep 5, 2024 in Questions / Documentation · Unanswered

  

  

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  ArchR is a good package

  solvi808 started Aug 29, 2024 in General

  

  

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  Genes removed upon running import10xFeatureMatrix

  jolvhull started Aug 29, 2024 in General

  

  

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  addMotifAnnotations() ran but peakAnnotation not added

  jiangpuxuan asked Jul 31, 2024 in Questions / Documentation · Unanswered

  

  

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  📣

  Vierstra motif archetypes are now natively supported

  rcorces announced Apr 16, 2022 in Announcements

  

  

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  Can I extract the iterative overlap part of the addReproduciblePeakSet function?

  kjtreese asked Jul 24, 2024 in Questions / Documentation · Unanswered

  

  

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  Differences between ArchR and Signac

  cv55 asked Feb 22, 2022 in Questions / Documentation · Unanswered

  

  

  

  

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  differentially called peaks do not stay the same when inverting groups

  michellemeier27 asked Jul 24, 2024 in Questions / Documentation · Unanswered

  

  

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  Obtaining enriched motif result for each peak

  yuyuliu asked Jul 18, 2024 in Questions / Documentation · Unanswered

  

  

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  Error: addDoubletScores about ggplot2

  yuyuyuto001 asked Feb 29, 2024 in Questions / Documentation · Unanswered

  

  

  

  

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  workflow queries

  hahahah-single asked Jul 26, 2021 in Questions / Documentation · Unanswered

  

  

  

  

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  how to extract specified gene activity score (such as CD35 gene) from GeneScoreMatrix for all cells

  chaiepi started Jul 15, 2024 in General

  

  

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  Raw or Normalized matrix when using addGeneExpressionMatrix with a matrix from Seurat/Scanpy?

  AmosFong1 asked Jul 4, 2024 in Questions / Documentation · Unanswered

  

  

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  extract varFeatures from addIterativeLSI

  bj-chen asked Jan 24, 2022 in Questions / Documentation · Answered

  

  

  

  

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