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Releases: RVanDamme/MUFFIN

fix nextflow incompatibility

22 Feb 13:36
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fix nextflow incompatibility

fixed not working spades conda config

16 Feb 10:15
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fixed maxbin not getting the cores info

16 Feb 10:01
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also added run reports to the result dir for workflow performance

fixed muffin not working on current nextflow

16 Feb 09:32
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  • fixed an issue that recent nextflow was not working for muffin, fixes #25

MUFFIN 1.0.3 Using nextflow 20.07+

29 Nov 19:45
ea5e452
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MUFFIN 1.0.3 Using nextflow 20.07+
update:

Updated sourmash and the gtdb database formated for sourmash7
Updated CheckM
Updated Metawrap

Fix:

Cpu/ram requirement
classify step parser
fix checkm issue (EOF error)
Norefine option 
Maxbin issue #14 
Concoct
Various issue from #15 

MUFFIN V1.0.2 with Nextflow 20.07+

11 Aug 14:31
bf3ef37
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MUFFIN 1.0.2 Using nextflow 20.07+
update:

  • syntax of DSL2 in the whole pipeline
  • version of Flye to 2.8 (sourmash genome size not required anymore)
  • version of metawrap to 2.3
  • increased error strategy to 5 retry

Fix:

  • metawrap installation through conda
  • version control of nextflow

MUFFIN V1.0.1 with Nextflow 20+ but >20.7.1

22 Jul 06:52
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MUFFIN 1.0.1
update:

  • Conda version of Concoct and Samtools

Fix:

  • Fix checkm setup of DB

MUFFIN V1.0.0 with Nextflow 20+ but >20.7.1

17 Jul 12:27
2474cdf
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MUFFIN 1.0.0
Addition:
-The whole MUFFIN pipeline including

  • 2 different methods to analyze
  • multiple engine and executor available
  • a modular and flexible analysis
  • a nice and tidy parser for annotation

update:
-Works with nextflow version 20+

Legacy 0.1 compatible nextflow 19.X

19 Feb 09:58
dfafbfd
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The legacy 0.1 version is the first version of nextflow that can be run (all the steps in a row, no modular choice yet)
It can be run on 19.X version of nextflow

legacy_beta.0.2

10 Jan 13:53
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legacy_beta.0.2 Pre-release
Pre-release
fix pankegg all gene link + text color