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update fellingdater
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RonaldVisser committed Apr 18, 2024
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19 changes: 11 additions & 8 deletions _site/index.html
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<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

<meta name="author" content="Ronald Visser">
<meta name="dcterms.date" content="2024-03-05">
<meta name="dcterms.date" content="2024-04-18">

<title>Dendrochronology and R - R-packages for dendrochronology</title>
<style>
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<div>
<div class="quarto-title-meta-heading">Published</div>
<div class="quarto-title-meta-contents">
<p class="date">March 5, 2024</p>
<p class="date">April 18, 2024</p>
</div>
</div>

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<td><a href="https://github.com/AndyBunn/dplR" class="uri">GItHub</a></td>
</tr>
<tr class="odd">
<td>fellingdateR</td>
<td>This R-package offers a set of functions that can assist you to infer felling date estimates from dated tree-ring series. The presence of (partially) preserved sapwood or waney edge allows to estimate a range for the actual felling date, for individual series as well as for a group of timbers. Furthermore, an additional function provides a tool to sum sapwood probability distributions, comparable to ‘summed probability densities’ commonly applied to sets of radiocarbon (<sup>14</sup>C) dates <span class="citation" data-cites="haneca2023">(<a href="#ref-haneca2023" role="doc-biblioref">Haneca 2023</a>)</span>.</td>
<td></td>
<td><a href="https://github.com/hanecakr/fellingDateR" class="uri">GitHub</a></td>
<td>fellingdater</td>
<td>This R-package offers a set of functions that can assist you to infer felling date estimates from dated tree-ring series. The presence of (partially) preserved sapwood or waney edge allows to estimate a range for the actual felling date, for individual series as well as for a group of timbers. Furthermore, an additional function provides a tool to sum sapwood probability distributions, comparable to ‘summed probability densities’ commonly applied to sets of radiocarbon (<sup>14</sup>C) dates <span class="citation" data-cites="haneca2024 haneca2020">(<a href="#ref-haneca2024" role="doc-biblioref">Haneca 2024</a>; <a href="#ref-haneca2020" role="doc-biblioref">Haneca, Debonne and Hoffsummer 2020</a>)</span>.</td>
<td><a href="https://docs.ropensci.org/fellingdater/">Website</a></td>
<td><a href="https://github.com/ropensci/fellingdater/" class="uri">GitHub</a></td>
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<tr class="even">
<td>measuRing</td>
Expand Down Expand Up @@ -413,8 +413,11 @@ <h1>List of R-packages for dendrochronology</h1>
<div id="ref-guiterman2020" class="csl-entry" role="doc-biblioentry">
Guiterman, CH, Lynch, AM and Axelson, JN. 2020 dfoliatR: An R package for detection and analysis of insect defoliation signals in tree rings. <em>Dendrochronologia</em> 63: 125750. DOI: https://doi.org/<a href="https://doi.org/10.1016/j.dendro.2020.125750">10.1016/j.dendro.2020.125750</a>.
</div>
<div id="ref-haneca2023" class="csl-entry" role="doc-biblioentry">
Haneca, K. 2023. <em><a href="https://github.com/hanecakr/fellingDateR">fellingdateR: An r package to facilitate the organisation, analysis and interpretation of tree-ring data from wooden heritage objects and structures</a></em>.
<div id="ref-haneca2024" class="csl-entry" role="doc-biblioentry">
Haneca, K. 2024 <em><a href="https://github.com/ropensci/fellingdater">Fellingdater: An r package to facilitate the organisation, analysis and interpretation of tree-ring data from wooden heritage objects and structures</a></em>.
</div>
<div id="ref-haneca2020" class="csl-entry" role="doc-biblioentry">
Haneca, K, Debonne, V and Hoffsummer, P. 2020 The ups and downs of the building trade in a medieval city: Tree-ring data as proxies for economic, social and demographic dynamics in Bruges (c. 1200<span></span>1500). <em>Dendrochronologia</em> 64: 125773. DOI: https://doi.org/<a href="https://doi.org/10.1016/j.dendro.2020.125773">10.1016/j.dendro.2020.125773</a>.
</div>
<div id="ref-jevsenak2018" class="csl-entry" role="doc-biblioentry">
Jevšenak, J and Levanič, T. 2018 dendroTools: R package for studying linear and nonlinear responses between tree-rings and daily environmental data. <em>Dendrochronologia</em> 48: 32–39. DOI: https://doi.org/<a href="https://doi.org/10.1016/j.dendro.2018.01.005">10.1016/j.dendro.2018.01.005</a>.
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</url>
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<loc>https://ronaldvisser.github.io/Dendro_R/index.html</loc>
<lastmod>2024-03-05T07:48:38.318Z</lastmod>
<lastmod>2024-04-18T07:52:44.034Z</lastmod>
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+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| dplR | General package for tree-ring analyses. It is possible to perform tree-ring analyses such as detrending, chronology building, and cross dating. The sotware reads and writes standard file formats used in dendrochronology [@bunn2008; @bunn2010]. | [CRAN](https://cran.r-project.org/web/packages/dplR/index.html) | [GItHub](https://github.com/AndyBunn/dplR){.uri} |
+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| fellingdateR | This R-package offers a set of functions that can assist you to infer felling date estimates from dated tree-ring series. The presence of (partially) preserved sapwood or waney edge allows to estimate a range for the actual felling date, for individual series as well as for a group of timbers. Furthermore, an additional function provides a tool to sum sapwood probability distributions, comparable to 'summed probability densities' commonly applied to sets of radiocarbon (^14^C) dates [@haneca2023]. | | [GitHub](https://github.com/hanecakr/fellingDateR){.uri} |
| fellingdater | This R-package offers a set of functions that can assist you to infer felling date estimates from dated tree-ring series. The presence of (partially) preserved sapwood or waney edge allows to estimate a range for the actual felling date, for individual series as well as for a group of timbers. Furthermore, an additional function provides a tool to sum sapwood probability distributions, comparable to 'summed probability densities' commonly applied to sets of radiocarbon (^14^C) dates [@haneca2024; @haneca2020]. | [Website](https://docs.ropensci.org/fellingdater/) | [GitHub](https://github.com/ropensci/fellingdater/){.uri} |
+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
| measuRing | Identification of ring borders on scanned image sections from dendrochronological samples. Processing of image reflectances to produce gray matrices and time series of smoothed gray values. Luminance data is plotted on segmented images for users to perform both: visual identification of ring borders or control of automatic detection. Routines to visually include/exclude ring borders on the R graphical devices, or automatically detect ring borders using a linear detection algorithm. This algorithm detects ring borders according to positive/negative extreme values in the smoothed time-series of gray values. Most of the in-package routines can be recursively implemented using the multiDetect() function [@lara2015]. | [CRAN](https://cran.r-project.org/web/packages/measuRing/index.html) | |
+-----------------+---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+--------------------------------------------------------------------------+---------------------------------------------------------------+
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22 changes: 22 additions & 0 deletions references.bib
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doi = {10.1016/j.dendro.2024.126167},
url = {https://www.sciencedirect.com/science/article/pii/S1125786524000043}
}

@techreport{haneca2024,
title = {fellingdater: an R package to facilitate the organisation, analysis and interpretation of tree-ring data from wooden heritage objects and structures},
author = {Haneca, Kristof},
year = {2024},
date = {2024},
url = {https://github.com/ropensci/fellingdater}
}

@article{haneca2020,
title = {The ups and downs of the building trade in a medieval city: Tree-ring data as proxies for economic, social and demographic dynamics in Bruges (c. 1200{\textendash}1500)},
author = {Haneca, Kristof and Debonne, Vincent and Hoffsummer, Patrick},
year = {2020},
month = {12},
date = {2020-12-01},
journal = {Dendrochronologia},
pages = {125773},
volume = {64},
doi = {10.1016/j.dendro.2020.125773},
url = {http://www.sciencedirect.com/science/article/pii/S1125786520301120},
langid = {en}
}

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