Minor updates to vignettes.

SydneyBioX · Sep 8, 2024 · 9b4ffe8 · 9b4ffe8
1 parent 7a89b48
commit 9b4ffe8
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Showing 2 changed files with 4 additions and 10 deletions.
diff --git a/vignettes/v1_seqFISH_mouseEmbryo.Rmd b/vignettes/v1_seqFISH_mouseEmbryo.Rmd
@@ -16,16 +16,13 @@ vignette: |
 
 ```{r, include = FALSE}
 knitr::opts_chunk$set(
-  collapse = TRUE,
-  message = FALSE,
-  warning = FALSE,
-  comment = "#>"
+  collapse = FALSE
 )
 ```
 
 # SeqFISH mouse embryo data analysis
 
-```{r}
+```{r setup, message = FALSE, warning = FALSE}
 # load required packages
 library(clustSIGNAL)
 library(distances)

diff --git a/vignettes/v2_MERFISH_mouseHypothalamus.Rmd b/vignettes/v2_MERFISH_mouseHypothalamus.Rmd
@@ -16,16 +16,13 @@ vignette: |
 
 ```{r, include = FALSE}
 knitr::opts_chunk$set(
-  collapse = TRUE,
-  message = FALSE,
-  warning = FALSE,
-  comment = "#>"
+  collapse = FALSE
 )
 ```
 
 # MERFISH mouse preoptic hypothalamus data analysis
 
-```{r}
+```{r setup, message = FALSE, warning = FALSE}
 # load required packages
 library(clustSIGNAL)
 library(distances)