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Issues list

Model that some leaves might be doublets/cycling?
#48 opened Sep 11, 2019 by alexandrebouchard
Run with various bin sizes: do larger bins kill the inference
#46 opened Nov 23, 2018 by alexandrebouchard
Forward simulators: ABC?
#45 opened Nov 23, 2018 by alexandrebouchard
Use discordant reads as input data?
#44 opened Oct 10, 2018 by alexandrebouchard
2
Small tasks humi
#43 opened Oct 10, 2018 by alexandrebouchard
Indicators of target failure humi
#42 opened Oct 10, 2018 by alexandrebouchard
Use initial population information humi
#41 opened Oct 10, 2018 by alexandrebouchard
Validation based on point mutations
#40 opened Aug 29, 2018 by alexandrebouchard
Validation based on classical characters? E.g. morphological traits?
#38 opened Aug 29, 2018 by alexandrebouchard
Update the pipeline
#37 opened Aug 29, 2018 by alexandrebouchard
Look at frequency spectrum statistics of trees to assess selection signal
#36 opened Aug 29, 2018 by alexandrebouchard
2
Pairing of events
#35 opened Aug 27, 2018 by alexandrebouchard
Detection and mitigation of compound bins
#34 opened Aug 27, 2018 by alexandrebouchard
Sanity check validation by in silico mixing
#33 opened Aug 27, 2018 by alexandrebouchard
1
Fix data conventions
#32 opened Aug 19, 2018 by alexandrebouchard
Investigate prior sensitivity
#31 opened Aug 18, 2018 by alexandrebouchard
Update instructions - they are outdated
#28 opened Aug 18, 2018 by alexandrebouchard
Running on merged clones of OV2295, OV2295(R2), TOV2295(R) cell lines
#25 opened Aug 18, 2018 by alexandrebouchard
1
Running on 9k cells as a scalability demonstration
#24 opened Aug 18, 2018 by alexandrebouchard
Run on SA 501 - check if X-loss occurs in a clade as validation
#23 opened Aug 18, 2018 by alexandrebouchard
Compatibility with 10X CNV output enhancement New feature or request
#22 opened Aug 8, 2018 by kieranrcampbell
5
Transition probabilities from HMMcopy
#20 opened Jul 30, 2018 by kieranrcampbell
1
Use Divide-and-Conquer SMC to impute branch lengths
#18 opened Jul 29, 2018 by alexandrebouchard
Migrate generation process mechanism to explicit false positive/false negative
#15 opened Jul 28, 2018 by alexandrebouchard
1
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