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*Change fMRISurface default to MSMSulc
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glasserm authored Mar 14, 2019
1 parent ae53eb6 commit b19a32f
Showing 1 changed file with 2 additions and 3 deletions.
5 changes: 2 additions & 3 deletions Examples/Scripts/GenericfMRISurfaceProcessingPipelineBatch.sh
Original file line number Diff line number Diff line change
Expand Up @@ -104,9 +104,8 @@ for Subject in $Subjlist ; do
FinalfMRIResolution="2" #Needs to match what is in fMRIVolume, i.e. 2mm for 3T HCP data and 1.6mm for 7T HCP data
SmoothingFWHM="2" #Recommended to be roughly the grayordinates spacing, i.e 2mm on HCP data
GrayordinatesResolution="2" #Needs to match what is in PostFreeSurfer. 2mm gives the HCP standard grayordinates space with 91282 grayordinates. Can be different from the FinalfMRIResolution (e.g. in the case of HCP 7T data at 1.6mm)
# RegName="MSMSulc" #MSMSulc is recommended, if binary is not available use FS (FreeSurfer)
RegName="FS"

RegName="MSMSulc" #MSMSulc is recommended, if binary is not available use FS (FreeSurfer)

if [ -n "${command_line_specified_run_local}" ] ; then
echo "About to run ${HCPPIPEDIR}/fMRISurface/GenericfMRISurfaceProcessingPipeline.sh"
queuing_command=""
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