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29 Open 17 Closed
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Issues list

CWL review
#80 opened Oct 19, 2024 by mr-c
Sage's official docker image fails on Apple M chips bug Something isn't working
#73 opened Oct 9, 2024 by vedran-kasalica
Test CWL annotations (executions and compare to the bio.tools annotations)
#56 opened Mar 11, 2024 by vedran-kasalica
@kretep @vedran-kasalica
Test and fix mzRecal
#54 opened Feb 12, 2024 by vedran-kasalica
Regenerate workflow example1 to example7 using APE with updated annotations so taht manual edit is not required
#53 opened Feb 12, 2024 by nahmedraja
@vedran-kasalica
Create a Workflomics End-to-End test
#50 opened Feb 7, 2024 by vedran-kasalica
@vedran-kasalica
Implement MSFragger
#47 opened Jan 31, 2024 by vedran-kasalica
Implement Sage
#45 opened Jan 31, 2024 by vedran-kasalica
Implement 2 PeptideProphet tools
#44 opened Jan 31, 2024 by vedran-kasalica
Regenerate example workflows 1 to 3 with APE with updated annotations of PeptideProphet(issue# 21) ProteinProphet(issue# 22) and StPeter(issue# 23)
#42 opened Jan 31, 2024 by nahmedraja
@vedran-kasalica
Design-time benchmarks - tooltips are cropped
#40 opened Jan 30, 2024 by vedran-kasalica
Add alternatives to PeptideProphet
#39 opened Jan 30, 2024 by vedran-kasalica
Add alternatives to g:Profiler
#38 opened Jan 30, 2024 by vedran-kasalica
Add alternatives to Comet
#36 opened Jan 29, 2024 by vedran-kasalica
2 of 4 tasks
2
Fix GOEnrichment
#35 opened Jan 29, 2024 by vedran-kasalica
Add SHIC
#34 opened Jan 29, 2024 by vedran-kasalica
@nahmedraja @vedran-kasalica
Test CLI on Windows
#31 opened Jan 28, 2024 by vedran-kasalica
2 tasks
@nahmedraja @magnuspalmblad @524D
Test CLI on Mac
#30 opened Jan 28, 2024 by vedran-kasalica
1 of 2 tasks
@kretep @vedran-kasalica
Test CLI on Linux
#29 opened Jan 28, 2024 by vedran-kasalica
1 of 2 tasks
@nahmedraja
Return docker images for the tools that were removed in the initial containerless PR.
#28 opened Jan 27, 2024 by vedran-kasalica
@nahmedraja
Include more working docker images (to support cwl tool execution)
#27 opened Jan 27, 2024 by vedran-kasalica
9 tasks
@nahmedraja @vedran-kasalica
@magnuspalmblad @524D
1
Error during container build
#18 opened Aug 24, 2023 by 524D
Build instructions error message
#17 opened Aug 24, 2023 by 524D
Consider using the bioconda "mulled" feature to make the container
#15 opened Jun 16, 2023 by mr-c
Using --leave-tmpdir option of cwltools documentation Improvements or additions to documentation
#14 opened Jun 14, 2023 by nahmedraja
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