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clean up instructions
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akotlar committed Sep 18, 2024
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Expand Up @@ -6,8 +6,16 @@ To build a Docker image using the `Dockerfile`, run the following:

```bash
cd ../ && docker build -t bystro-annotator -f Dockerfile.perl .
# Run Bystro Annotator from the new Docker container; replace <command> with the desired command
# If no command provided, will automatically run bystro-annotate.pl --help
docker run bystro-annotator <command>
```

- Commands:
- Run the annotator: `docker run bystro-annotator bystro-annotate.pl --help`
- Build a new Bystro database: `docker run bystro-annotator bystro-build.pl --help`
- Fetch dependencies, before building: `docker run bystro-annotator bystro-utils.pl --help`

## Installing Bystro Annotator Bare Metal / Locally

The easiest way to install Bystro directly on your machine is to run:
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