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artic-mpxv-illumina-nf v1.1.0
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@BioWilko BioWilko released this 24 Sep 12:16
· 28 commits to main since this release
1.1.0
d7e41f3
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Learn about vigilant mode.

Main Changes:

  • Add a modified align_trim (from fieldbioinformatics) for primer trimming and normalisation of read depth.
  • Move away from bbnorm for normalisation, resource utilisation is too high to be reasonable.
  • ivar trim was fine for sequence based primer trimming but it's simpler to do something that is alignment based
  • Add various primer schemes and move to the suffix based scheme naming system for scheme remaps
  • Remove variant annotation due to NCBI gff3 files being incompatible with bcftools csq
  • Add option to skip host filtering if desired
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