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cainja committed Dec 20, 2024
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2 changes: 1 addition & 1 deletion coverage/arcade.patch.agent.cell/PatchCell.html
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362 changes: 185 additions & 177 deletions coverage/arcade.patch.agent.cell/PatchCell.java.html
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2 changes: 1 addition & 1 deletion coverage/arcade.patch.agent.cell/PatchCellCancer.html
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<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../jacoco-resources/report.css" type="text/css"/><link rel="shortcut icon" href="../jacoco-resources/report.gif" type="image/gif"/><title>PatchCellCancer</title><script type="text/javascript" src="../jacoco-resources/sort.js"></script></head><body onload="initialSort(['breadcrumb'])"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../jacoco-sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">arcade</a> &gt; <a href="index.html" class="el_package">arcade.patch.agent.cell</a> &gt; <span class="el_class">PatchCellCancer</span></div><h1>PatchCellCancer</h1><table class="coverage" cellspacing="0" id="coveragetable"><thead><tr><td class="sortable" id="a" onclick="toggleSort(this)">Element</td><td class="down sortable bar" id="b" onclick="toggleSort(this)">Missed Instructions</td><td class="sortable ctr2" id="c" onclick="toggleSort(this)">Cov.</td><td class="sortable bar" id="d" onclick="toggleSort(this)">Missed Branches</td><td class="sortable ctr2" id="e" onclick="toggleSort(this)">Cov.</td><td class="sortable ctr1" id="f" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="g" onclick="toggleSort(this)">Cxty</td><td class="sortable ctr1" id="h" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="i" onclick="toggleSort(this)">Lines</td><td class="sortable ctr1" id="j" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="k" onclick="toggleSort(this)">Methods</td></tr></thead><tfoot><tr><td>Total</td><td class="bar">48 of 80</td><td class="ctr2">40%</td><td class="bar">3 of 6</td><td class="ctr2">50%</td><td class="ctr1">4</td><td class="ctr2">8</td><td class="ctr1">6</td><td class="ctr2">15</td><td class="ctr1">2</td><td class="ctr2">5</td></tr></tfoot><tbody><tr><td id="a1"><a href="PatchCellCancer.java.html#L62" class="el_method">make(int, CellState, MersenneTwisterFast)</a></td><td class="bar" id="b0"><img src="../jacoco-resources/redbar.gif" width="120" height="10" title="38" alt="38"/></td><td class="ctr2" id="c3">0%</td><td class="bar" id="d0"><img src="../jacoco-resources/redbar.gif" width="120" height="10" title="2" alt="2"/></td><td class="ctr2" id="e2">0%</td><td class="ctr1" id="f0">2</td><td class="ctr2" id="g0">2</td><td class="ctr1" id="h0">3</td><td class="ctr2" id="i2">3</td><td class="ctr1" id="j0">1</td><td class="ctr2" id="k0">1</td></tr><tr><td id="a2"><a href="PatchCellCancer.java.html#L31" class="el_method">PatchCellCancer(PatchCellContainer, Location, Parameters)</a></td><td class="bar" id="b1"><img src="../jacoco-resources/redbar.gif" width="22" height="10" title="7" alt="7"/></td><td class="ctr2" id="c4">0%</td><td class="bar" id="d3"/><td class="ctr2" id="e3">n/a</td><td class="ctr1" id="f1">1</td><td class="ctr2" id="g3">1</td><td class="ctr1" id="h1">2</td><td class="ctr2" id="i3">2</td><td class="ctr1" id="j1">1</td><td class="ctr2" id="k1">1</td></tr><tr><td id="a0"><a href="PatchCellCancer.java.html#L86" class="el_method">checkNeighborhood(SimState, PatchCell)</a></td><td class="bar" id="b2"><img src="../jacoco-resources/redbar.gif" width="9" height="10" title="3" alt="3"/><img src="../jacoco-resources/greenbar.gif" width="44" height="10" title="14" alt="14"/></td><td class="ctr2" id="c2">82%</td><td class="bar" id="d1"><img src="../jacoco-resources/redbar.gif" width="60" height="10" title="1" alt="1"/><img src="../jacoco-resources/greenbar.gif" width="60" height="10" title="1" alt="1"/></td><td class="ctr2" id="e1">50%</td><td class="ctr1" id="f2">1</td><td class="ctr2" id="g1">2</td><td class="ctr1" id="h2">1</td><td class="ctr2" id="i0">4</td><td class="ctr1" id="j2">0</td><td class="ctr2" id="k2">1</td></tr><tr><td id="a4"><a href="PatchCellCancer.java.html#L54" class="el_method">step(SimState)</a></td><td class="bar" id="b3"><img src="../jacoco-resources/greenbar.gif" width="34" height="10" title="11" alt="11"/></td><td class="ctr2" id="c0">100%</td><td class="bar" id="d2"><img src="../jacoco-resources/greenbar.gif" width="120" height="10" title="2" alt="2"/></td><td class="ctr2" id="e0">100%</td><td class="ctr1" id="f3">0</td><td class="ctr2" id="g2">2</td><td class="ctr1" id="h3">0</td><td class="ctr2" id="i1">4</td><td class="ctr1" id="j3">0</td><td class="ctr2" id="k3">1</td></tr><tr><td id="a3"><a href="PatchCellCancer.java.html#L44" class="el_method">PatchCellCancer(PatchCellContainer, Location, Parameters, GrabBag)</a></td><td class="bar" id="b4"><img src="../jacoco-resources/greenbar.gif" width="22" height="10" title="7" alt="7"/></td><td class="ctr2" id="c1">100%</td><td class="bar" id="d4"/><td class="ctr2" id="e4">n/a</td><td class="ctr1" id="f4">0</td><td class="ctr2" id="g4">1</td><td class="ctr1" id="h4">0</td><td class="ctr2" id="i4">2</td><td class="ctr1" id="j4">0</td><td class="ctr2" id="k4">1</td></tr></tbody></table><div class="footer"><span class="right">Created with <a href="http://www.jacoco.org/jacoco">JaCoCo</a> 0.8.5.201910111838</span></div></body></html>
<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"><html xmlns="http://www.w3.org/1999/xhtml" lang="en"><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8"/><link rel="stylesheet" href="../jacoco-resources/report.css" type="text/css"/><link rel="shortcut icon" href="../jacoco-resources/report.gif" type="image/gif"/><title>PatchCellCancer</title><script type="text/javascript" src="../jacoco-resources/sort.js"></script></head><body onload="initialSort(['breadcrumb'])"><div class="breadcrumb" id="breadcrumb"><span class="info"><a href="../jacoco-sessions.html" class="el_session">Sessions</a></span><a href="../index.html" class="el_report">arcade</a> &gt; <a href="index.html" class="el_package">arcade.patch.agent.cell</a> &gt; <span class="el_class">PatchCellCancer</span></div><h1>PatchCellCancer</h1><table class="coverage" cellspacing="0" id="coveragetable"><thead><tr><td class="sortable" id="a" onclick="toggleSort(this)">Element</td><td class="down sortable bar" id="b" onclick="toggleSort(this)">Missed Instructions</td><td class="sortable ctr2" id="c" onclick="toggleSort(this)">Cov.</td><td class="sortable bar" id="d" onclick="toggleSort(this)">Missed Branches</td><td class="sortable ctr2" id="e" onclick="toggleSort(this)">Cov.</td><td class="sortable ctr1" id="f" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="g" onclick="toggleSort(this)">Cxty</td><td class="sortable ctr1" id="h" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="i" onclick="toggleSort(this)">Lines</td><td class="sortable ctr1" id="j" onclick="toggleSort(this)">Missed</td><td class="sortable ctr2" id="k" onclick="toggleSort(this)">Methods</td></tr></thead><tfoot><tr><td>Total</td><td class="bar">45 of 76</td><td class="ctr2">40%</td><td class="bar">3 of 6</td><td class="ctr2">50%</td><td class="ctr1">4</td><td class="ctr2">8</td><td class="ctr1">5</td><td class="ctr2">15</td><td class="ctr1">2</td><td class="ctr2">5</td></tr></tfoot><tbody><tr><td id="a1"><a href="PatchCellCancer.java.html#L62" class="el_method">make(int, CellState, MersenneTwisterFast)</a></td><td class="bar" id="b0"><img src="../jacoco-resources/redbar.gif" width="120" height="10" title="38" alt="38"/></td><td class="ctr2" id="c3">0%</td><td class="bar" id="d0"><img src="../jacoco-resources/redbar.gif" width="120" height="10" title="2" alt="2"/></td><td class="ctr2" id="e2">0%</td><td class="ctr1" id="f0">2</td><td class="ctr2" id="g0">2</td><td class="ctr1" id="h0">3</td><td class="ctr2" id="i2">3</td><td class="ctr1" id="j0">1</td><td class="ctr2" id="k0">1</td></tr><tr><td id="a2"><a href="PatchCellCancer.java.html#L31" class="el_method">PatchCellCancer(PatchCellContainer, Location, Parameters)</a></td><td class="bar" id="b1"><img src="../jacoco-resources/redbar.gif" width="22" height="10" title="7" alt="7"/></td><td class="ctr2" id="c4">0%</td><td class="bar" id="d3"/><td class="ctr2" id="e3">n/a</td><td class="ctr1" id="f1">1</td><td class="ctr2" id="g3">1</td><td class="ctr1" id="h1">2</td><td class="ctr2" id="i3">2</td><td class="ctr1" id="j1">1</td><td class="ctr2" id="k1">1</td></tr><tr><td id="a4"><a href="PatchCellCancer.java.html#L54" class="el_method">step(SimState)</a></td><td class="bar" id="b2"><img src="../jacoco-resources/greenbar.gif" width="37" height="10" title="12" alt="12"/></td><td class="ctr2" id="c0">100%</td><td class="bar" id="d2"><img src="../jacoco-resources/greenbar.gif" width="120" height="10" title="2" alt="2"/></td><td class="ctr2" id="e0">100%</td><td class="ctr1" id="f3">0</td><td class="ctr2" id="g1">2</td><td class="ctr1" id="h2">0</td><td class="ctr2" id="i0">4</td><td class="ctr1" id="j2">0</td><td class="ctr2" id="k2">1</td></tr><tr><td id="a0"><a href="PatchCellCancer.java.html#L86" class="el_method">checkNeighborhood(SimState, PatchCell)</a></td><td class="bar" id="b3"><img src="../jacoco-resources/greenbar.gif" width="37" height="10" title="12" alt="12"/></td><td class="ctr2" id="c1">100%</td><td class="bar" id="d1"><img src="../jacoco-resources/redbar.gif" width="60" height="10" title="1" alt="1"/><img src="../jacoco-resources/greenbar.gif" width="60" height="10" title="1" alt="1"/></td><td class="ctr2" id="e1">50%</td><td class="ctr1" id="f2">1</td><td class="ctr2" id="g2">2</td><td class="ctr1" id="h3">0</td><td class="ctr2" id="i1">4</td><td class="ctr1" id="j3">0</td><td class="ctr2" id="k3">1</td></tr><tr><td id="a3"><a href="PatchCellCancer.java.html#L44" class="el_method">PatchCellCancer(PatchCellContainer, Location, Parameters, GrabBag)</a></td><td class="bar" id="b4"><img src="../jacoco-resources/greenbar.gif" width="22" height="10" title="7" alt="7"/></td><td class="ctr2" id="c2">100%</td><td class="bar" id="d4"/><td class="ctr2" id="e4">n/a</td><td class="ctr1" id="f4">0</td><td class="ctr2" id="g4">1</td><td class="ctr1" id="h4">0</td><td class="ctr2" id="i4">2</td><td class="ctr1" id="j4">0</td><td class="ctr2" id="k4">1</td></tr></tbody></table><div class="footer"><span class="right">Created with <a href="http://www.jacoco.org/jacoco">JaCoCo</a> 0.8.5.201910111838</span></div></body></html>
8 changes: 4 additions & 4 deletions coverage/arcade.patch.agent.cell/PatchCellCancer.java.html
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Original file line number Diff line number Diff line change
Expand Up @@ -77,15 +77,15 @@
/**
* Checks neighborhood for free locations.
*
* &lt;p&gt;If there is at least one free location, cell state becomes undefined.
* &lt;p&gt;If there is at least one free location for proliferation, cell state becomes undefined.
*
* @param simstate the MASON simulation state
* @param cell the reference cell
*/
private static void checkNeighborhood(SimState simstate, PatchCell cell) {
private void checkNeighborhood(SimState simstate, PatchCell cell) {
<span class="fc" id="L86"> Simulation sim = (Simulation) simstate;</span>
<span class="pc bpc" id="L87" title="1 of 2 branches missed."> if (PatchCell.findFreeLocations(sim, cell.location, cell.volume, cell.height).size() &gt; 0) {</span>
<span class="nc" id="L88"> cell.setState(State.UNDEFINED);</span>
<span class="pc bpc" id="L87" title="1 of 2 branches missed."> if (findFreeLocations(sim).size() &gt; 0) {</span>
<span class="fc" id="L88"> cell.setState(State.UNDEFINED);</span>
}
<span class="fc" id="L90"> }</span>
}
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