getting ready for cran

bcgov · Oct 5, 2018 · 2265989 · 2265989
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -9,4 +9,5 @@
 ^CODE_OF_CONDUCT.md$
 ^CONTRIBUTING.md$
 ^docs$
-^build.R$
+^build.R$
+^cran-comments\.md$
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: ssdtools
-Version: 0.0.1.9003
+Version: 0.0.2
 Date: 2018-10-04
 Title: Species Sensitivity Distributions
 Description: Fits and plots species sensitivity distributions using 

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,8 @@
+# ssdtools 0.0.2
+
+* Added contributors
+* Added hex
+
 # ssdtools 0.0.1
 
 * Initial Release
diff --git a/R/hc.R b/R/hc.R
@@ -39,7 +39,9 @@ ssd_hc.fitdist <- function(x, hc = 5L, nboot = 1001, level = 0.95, ...) {
 #' @describeIn ssd_hc Hazard Concentration
 #' @export
 #' @examples
+#' \dontrun{
 #' ssd_hc(fluazinam_lnorm)
+#' }
 ssd_hc.fitdistcens <- function(x, hc = 5L, nboot = 1001, level = 0.95, ...) {
   check_vector(hc, c(1L,99L), length = 1)
   predict(x, percent = hc, nboot = nboot, level = level)

diff --git a/R/predict.R b/R/predict.R
@@ -51,7 +51,9 @@ predict.fitdist <- function(object, percent = 1:99,
 #' @inheritParams predict.fitdists
 #' @export
 #' @examples
+#' \dontrun{
 #' predict(fluazinam_lnorm, percent = c(5L, 50L))
+#' }
 predict.fitdistcens <- function(object, percent = 1:99,
                             nboot = 1001, level = 0.95, ...) {
   check_vector(percent, c(1L, 99L), length = c(1, Inf),

diff --git a/README.md b/README.md
@@ -111,7 +111,7 @@ ssd_hc(boron_dists)
 #> # A tibble: 1 x 5
 #>   percent   est    se   lcl   ucl
 #>     <int> <dbl> <dbl> <dbl> <dbl>
-#> 1       5  1.25 0.747 0.603  3.18
+#> 1       5  1.25 0.717 0.619  3.13
 ```
 
 Model-averaged predictions complete with confidence intervals can be
@@ -154,7 +154,7 @@ See the `data-raw` folder for more information.
 To cite package 'ssdtools' in publications use:
 
   Joe Thorley and Carl Schwarz (2018). ssdtools: Species
-  Sensitivity Distributions. R package version 0.0.1.9002.
+  Sensitivity Distributions. R package version 0.0.1.9003.
   https://github.com/bcgov/ssdca
 
 A BibTeX entry for LaTeX users is
@@ -163,7 +163,7 @@ A BibTeX entry for LaTeX users is
     title = {ssdtools: Species Sensitivity Distributions},
     author = {Joe Thorley and Carl Schwarz},
     year = {2018},
-    note = {R package version 0.0.1.9002},
+    note = {R package version 0.0.1.9003},
     url = {https://github.com/bcgov/ssdca},
   }
 ```

diff --git a/cran-comments.md b/cran-comments.md
@@ -0,0 +1,15 @@
+## Test environments
+
+* local OS X install, R 3.5.1
+* ubuntu 12.04 (on travis-ci), R 3.5.1
+* win-builder (devel and release)
+
+## R CMD check results
+
+0 errors | 0 warnings | 1 note
+
+* This is a new release.
+
+## Reverse dependencies
+
+This is a new release, so there are no reverse dependencies.
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/ssdca.html b/docs/articles/ssdca.html
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diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/reference/autoplot.fitdist.html b/docs/reference/autoplot.fitdist.html
diff --git a/docs/reference/autoplot.fitdistcens.html b/docs/reference/autoplot.fitdistcens.html
diff --git a/docs/reference/autoplot.fitdists.html b/docs/reference/autoplot.fitdists.html
diff --git a/docs/reference/autoplot.fitdistscens.html b/docs/reference/autoplot.fitdistscens.html
diff --git a/docs/reference/boron_data.html b/docs/reference/boron_data.html
diff --git a/docs/reference/boron_dists.html b/docs/reference/boron_dists.html
diff --git a/docs/reference/boron_lnorm.html b/docs/reference/boron_lnorm.html
diff --git a/docs/reference/boron_pred.html b/docs/reference/boron_pred.html
diff --git a/docs/reference/ccme_data.html b/docs/reference/ccme_data.html
diff --git a/docs/reference/comma_signif.html b/docs/reference/comma_signif.html
diff --git a/docs/reference/fluazinam_dists.html b/docs/reference/fluazinam_dists.html
diff --git a/docs/reference/fluazinam_lnorm.html b/docs/reference/fluazinam_lnorm.html
diff --git a/docs/reference/fluazinam_pred.html b/docs/reference/fluazinam_pred.html
diff --git a/docs/reference/geom_hcintersect.html b/docs/reference/geom_hcintersect.html