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Integrate JBrowse into Varify #356

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Replace Alamut with JBrowse
Fixes #338

Signed-off-by: Ryan O'Hara [email protected]

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Coverage decreased (-0.22%) when pulling 535d054 on ryanjohara:jbrowse into 638302d on cbmi:master.

@ryanjohara ryanjohara force-pushed the jbrowse branch 2 times, most recently from c48d03a to a236e79 Compare August 20, 2014 18:24
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Coverage decreased (-0.27%) when pulling a236e79 on ryanjohara:jbrowse into 94f9e1f on cbmi:master.

@ryanjohara ryanjohara force-pushed the jbrowse branch 2 times, most recently from 518d853 to 32214ac Compare August 21, 2014 18:36
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Coverage decreased (-0.27%) when pulling 32214ac on ryanjohara:jbrowse into 94f9e1f on cbmi:master.

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Coverage Status

Coverage decreased (-0.27%) when pulling 32214ac on ryanjohara:jbrowse into 94f9e1f on cbmi:master.

@ryanjohara ryanjohara force-pushed the jbrowse branch 2 times, most recently from e2318bf to 39f4398 Compare August 27, 2014 17:21
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Coverage decreased (-0.39%) when pulling 39f4398 on ryanjohara:jbrowse into 94f9e1f on cbmi:master.

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Coverage decreased (-0.39%) when pulling aabc141 on ryanjohara:jbrowse into 94f9e1f on cbmi:master.

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Coverage decreased (-0.39%) when pulling 0758776 on ryanjohara:jbrowse into bd39aaa on cbmi:master.

@ryanjohara ryanjohara force-pushed the jbrowse branch 3 times, most recently from b4ffd92 to 3628ef5 Compare September 8, 2014 17:37
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Coverage decreased (-0.48%) when pulling 3628ef5 on ryanjohara:jbrowse into bd39aaa on cbmi:master.

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Coverage Status

Coverage decreased (-0.48%) when pulling 3628ef5 on ryanjohara:jbrowse into bd39aaa on cbmi:master.

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Coverage Status

Coverage decreased (-0.48%) when pulling 3628ef5 on ryanjohara:jbrowse into bd39aaa on cbmi:master.

Supplement Alamut with JBrowse
Fixes chop-dbhi#338

Signed-off-by: Ryan O'Hara <[email protected]>
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Coverage decreased (-0.48%) when pulling 171ceec on ryanjohara:jbrowse into bd39aaa on cbmi:master.

Signed-off-by: Don Naegely <[email protected]>
Signed-off-by: Don Naegely <[email protected]>
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The two items that remain before this PR can be merged in are 1)#360 and applying the same fix to the JBrowse button, and 2)adding a gzip and tabix step to the data pipeline for VCFs.

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Integrate JBrowse into Varify as Alamut replacement
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