fix for coloredby

scripts/odp

@@ -208,9 +208,7 @@ if "plot_LGs" not in config:
 
 if config["plot_LGs"]:
     # This set of files plots the installed LGs against all of the datasets
-    file_targets += [config["tool"] + "/step0-blastp_results/{}_against_{}.hmmsearch.filt.blastp".format(hmm, sp)
-      for sp in config["analysisspecies"] for hmm in config["prot_to_color"]]
-    # color by the things in the chrom settings
+    # Color by the things in the chrom settings.
     file_targets += [config["tool"] + "/step2-figures/synteny_coloredby_{}/{}_xy_reciprocal_best_hits.coloredby_{}.plotted.rbh".format(y, x, y)
       for x in config["analysispairs"] for y in config["prot_to_color"]]
     file_targets += [config["tool"] + "/step2-figures/synteny_coloredby_{}/{}_xy_synteny_coloredby_{}.pdf".format(y, x, y)
@@ -2736,5 +2734,4 @@ rule ALG_decay_plot:
             ALG_results[name] = results
 
         # plot the results with this dataframe
-        plot_decay(ALG_results, output.plot, output.data)
-
+        plot_decay(ALG_results, output.plot, output.data)