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27 Open 54 Closed
27 Open 54 Closed
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Issues list

How can I customize the color and chromosome order of the plot that odp_nway_rbh output?
#83 opened Oct 10, 2024 by hhzhao713
Error running test again
#82 opened Sep 4, 2024 by aebaci
2
MissingInputException in line 289 of .../scripts/odp: Missing input files for rule n_ways_reciprocal_best:
#80 opened Aug 7, 2024 by piamer
1
hmmsearch --incE 1E-5 --tblout odp/step0-blastp_results/BCnSSimakov2022_against_Csch.hmmsearch --cpu 8 --noali --notextw /Share/user/dzw/software/odp/LG_db/BCnSSimakov2022/BCnSSimakov2022.hmm odp/db/Csch_prots.pep > /dev/null
#79 opened Jun 26, 2024 by dzwzs
1
Unexpected keyword retries in rule definition (odp, line 294)
#78 opened Jun 24, 2024 by LittleFrogHill
2
running on M1 mac issues, solved!
#77 opened Jun 19, 2024 by madeleineaaseremedios
"nan" being replaced in chromosome names
#76 opened May 31, 2024 by tbrown91
Flipping chromosomes
#75 opened May 21, 2024 by victor4110
Error in rule plot_synteny_nocolor
#74 opened May 20, 2024 by HX-FAshur
1
Make documentation more clear about plotorder
#73 opened May 8, 2024 by conchoecia
example input files
#71 opened Apr 27, 2024 by songweizhi
1
segmentation fault following Matplotlib GUI usage warning - QObject::killTimer: Timers cannot be stopped from another thread
#70 opened Apr 23, 2024 by AdamVS
1
config file for ALGs part 7 - Plot mixing of select linkage groups
#69 opened Apr 4, 2024 by Taojianchang
1
Update .chrom parser to avoid 5+ col error
#68 opened Mar 27, 2024 by conchoecia
IndexError: list index out of range
#67 opened Mar 5, 2024 by sim3023
2
NCBIgff2chrom -> gxf2chrom
#66 opened Mar 4, 2024 by alejandrogzi
2
chrom from NCBI not getting all the intervals
#63 opened Feb 2, 2024 by conchoecia
docker image
#56 opened Oct 23, 2023 by phbrito
1
find duplicate protein substrings with cd-hit
#45 opened Jul 5, 2023 by conchoecia
2
Draw the ribbon diagrams without clipping masks enhancement New feature or request
#40 opened Jun 23, 2023 by conchoecia
@conchoecia
problem converting gff
#37 opened Jun 20, 2023 by pedres
3
make odp_nway_rbh plot a ribbon diagram enhancement New feature or request
#31 opened Jun 1, 2023 by conchoecia
1
8
Enable ALGs to be one-species or two-species
#28 opened May 29, 2023 by conchoecia
genome_rearrangement_simulation should only shuffle one genome per simulation
#20 opened Feb 25, 2023 by conchoecia
Implement gff ingestion enhancement New feature or request
#18 opened Feb 25, 2023 by conchoecia
@conchoecia
ProTip! Adding no:label will show everything without a label.