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rearranged readme
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asouthgate committed Mar 9, 2019
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DESCRIPTION

VAPOR is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis. VAPOR is provided with a large set of reference fastas (> 20,000) for a given segment, a set of reads, and attempts to retrieve one that is closest to the sample strain.
VAPOR is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis. VAPOR is provided with a fasta file of full-length sequences (> 20,000) for a given segment, a set of reads, and attempts to retrieve a reference that is closest to the sample strain.

REQUIREMENTS

Python 3.x
NumPy >= 1.51.x

INSTALLATION

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TESTING

To test, run:
A test dataset is provided in the repository/tests. To test, clone the repo as above, and run:

vapor.py -fq tests/test_reads.fq -fa tests/HA_sample.fa

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Email (for inquiries): [email protected]

REQUIREMENTS

Python 3.x
NumPy >= 1.51.x

COPYRIGHT

Copyright 2018 Joel Southgate
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