Code

add CWL PROV support #778

Code

Merged

fmigneault merged 28 commits intomastercrim-ca/weaver:masterfrom cwl-provcrim-ca/weaver:cwl-provCopy head branch name to clipboardDec 19, 2024

+2,987-135

Commits

Commits on Dec 6, 2024

• [wip] add CWL PROV support - basic only (no extra weaver-specific tracking) (relates to #673)

  fmigneault

  committed
  2a5a3ee

Commits on Dec 7, 2024

• adjust PROV for potential metadata updates - works for workflow, but not single CommandLineTool (relates to common-workflow-language/cwltool#2082)

  fmigneault

  committed
  28af8a5

Commits on Dec 9, 2024

• fix job path resolution

  fmigneault

  committed
  f15af39

Commits on Dec 11, 2024

• add all path variations of CWLProv operations (relates to #673)

  fmigneault

  committed
  34fe955

• return job links within prov responses

  fmigneault

  committed
  8979618

• add conformance and requirements classes for PROV of part 4 job management

  fmigneault

  committed
  851c1f1

• pin versions for cwlprov

  fmigneault

  committed
  514e7e3

Commits on Dec 12, 2024

• functional PROV with extra Weaver metadata

  fmigneault

  committed
  320d485

Commits on Dec 13, 2024

• refactor PROV definitions into separate module + add WeaverClient/CLI PROV + many tests

  fmigneault

  committed
  fbdc237

• fix linting

  fmigneault

  committed
  450da18

Commits on Dec 14, 2024

• disable security check for non-security related use of SHA1

  fmigneault

  committed
  c995ea2

• use proper fix for non-security use of SHA1

  fmigneault

  committed
  1c6c7a8

• Merge branch 'master' into cwl-prov

  fmigneault

  authored
  aab2a85

• update PROV docs

  fmigneault

  committed
  a09d7af

• allow PROV endpoints to be disabled + fixes to parsing PROV format + more doc examples

  fmigneault

  committed
  d3c1c52

• make PROV image source more obvious

  fmigneault

  committed
  a3a8314

• fix test

  fmigneault

  committed
  ab2c917

• fix backward compat Python 3.9 for simultanous classmethod and classproperty decorators

  fmigneault

  committed
  2546123

Commits on Dec 18, 2024

• Merge remote-tracking branch 'origin/master' into cwl-prov

  fmigneault

  committed
  0aea60b

• update changelogs and docs about prov features

  fmigneault

  committed
  31e0969

• pin cwltool==3.1.20241217163858 (relates to common-workflow-language/cwltool#2082)

  fmigneault

  committed
  63aee8f

• drop mixed use of classproperty/classmethod that has removed support by Py313 - use classmethod explicitly

  fmigneault

  committed
  3ee07a8

• patch false-positive pylint

  fmigneault

  committed
  4934343

• fix mock for WPS package test needing a job to resolve PROV configuration

  fmigneault

  committed
  f104248

Commits on Dec 19, 2024

• add missing coverage for prov

  fmigneault

  committed
  f5352d1

• fix imports linting

  fmigneault

  committed
  b91cfc6

• fix tests - handle cwltool logs sometimes adding a suffix idx to distinguish between similarly named jobs

  fmigneault

  committed
  83169b5

• consider potential alternate log name for cwltool.job module

  fmigneault

  committed
  e41cd24