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Pull requests: dib-lab/khmer

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Pull requests list

Add Pytest 8 compat
#1923 opened Feb 17, 2024 by mr-c Loading…
5 tasks done
Fix build against Python 3.12
#1922 opened Nov 23, 2023 by ogayot Loading…
3 of 5 tasks
re-run cython to support Python 3.10 + misc patches from the Debian package
#1917 opened Aug 22, 2022 by mr-c Loading…
3 of 5 tasks
1
Add badges for the Debian packages
#1910 opened Feb 22, 2021 by mr-c Loading…
1 of 5 tasks
Create countgraph correctly
#1908 opened Oct 26, 2020 by ryfi Loading…
[WIP] Cleaning up build
#1888 opened Feb 21, 2019 by standage Loading…
[WIP] Experiment compacting counttables into a nodetable given a max abundance criterion C++ Cython Work In Progress
#1874 opened Jun 18, 2018 by standage Loading…
1 of 3 tasks
2
Mqf integration2
#1873 opened Jun 18, 2018 by shokrof Loading…
5 tasks done
7
switch to using c++ compiler instead of g++ to fix cpp-demos on mac os x
#1865 opened May 19, 2018 by ctb Loading…
5
[MRG] Add "good PR" examples Documentation Ready For Review and Merge!
#1848 opened Mar 14, 2018 by standage Loading…
1 task done
1
NOT FOR MERGING -- Testing CQF versus bloom filter and count-min sketch
#1836 opened Feb 4, 2018 by drtamermansour Loading…
8 tasks
1
boink extensions: or, streaming cDBG stuff
#1821 opened Dec 11, 2017 by camillescott Loading…
8 tasks
[WIP] Prototype: count k-mers in banded mode in a single pass Work In Progress
#1818 opened Nov 16, 2017 by standage Loading…
8 tasks
3
Fix usage of merge-partitions
#1802 opened Oct 21, 2017 by souravsingh Loading…
6 of 8 tasks
1
Cython tidying Cython
#1774 opened Sep 7, 2017 by camillescott Loading…
8 tasks
4
[MRG] test, and actually fix, find-nullomers script; add documentation and test input file
#1768 opened Sep 1, 2017 by ctb Loading…
8 tasks done
3
[WIP] Enable banding for computing k-mer abundance distributions Work In Progress
#1767 opened Aug 31, 2017 by standage Loading…
8 tasks
3
[WIP] Add FNV1a hash function
#1760 opened Aug 22, 2017 by betatim Loading…
10 tasks
5
Promote error correction scripts from sandbox
#1743 opened Jul 10, 2017 by wltrimbl Loading…
6 of 19 tasks
8
[WIP] Enable automatic detecting and loading all filter/sketch types Work In Progress
#1717 opened Jun 1, 2017 by standage Loading…
8 tasks
2
[WIP] Add infrastructure for fixed random seeds in tests
#1655 opened Mar 1, 2017 by betatim Loading…
8 tasks
5
[WIP] Add a -H/--hash-function option.
#1623 opened Feb 16, 2017 by ctb Loading…
8 tasks
1
Fix compiler and linker warnings
#1605 opened Feb 1, 2017 by betatim Loading…
2 tasks done
14
Atomic nibble instead of mutex
#1601 opened Jan 30, 2017 by betatim Loading…
8 tasks done
7
rename consume to consume_string
#1589 opened Jan 24, 2017 by ctb Loading…
8 tasks
ProTip! Exclude everything labeled bug with -label:bug.