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PlatyMatch ROI table sorting fix #111

Merged
merged 2 commits into from
Jul 10, 2024
Merged

PlatyMatch ROI table sorting fix #111

merged 2 commits into from
Jul 10, 2024

Commits on Jul 10, 2024

  1. Add check for nuclear count and skip organoid pairs with 3 nuclei or … 

    …less.

Also improve info messages to include round info.
    @nrepina
    nrepina committed Jul 10, 2024
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  2. Change loading of ROI ids in PlatyMatch task to handle unsorted annda… 

    …ta tables.

Previously assumed that order of ROI table follows numerically increasing order. However this might not be the case after organoid-level registration, as after relabeling there is no convenient anndata function to sort X based on obs names. Therefore modify PlatyMatch task to load ROIs based on organoid label, not row id. Note that organoid transformation matrices now saved based on label value, not row id.
    @nrepina
    nrepina committed Jul 10, 2024
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