Releases · lmcinnes/umap

28 Oct 17:28

lmcinnes

release-0.5.7

9fc083b

release-0.5.7 Latest

Latest

What's Changed

Update README.rst by @Slyderek in #1111
Allow consistent transform by UMAP by @IntelleKarl in #1129
docs: mention "precomputed" metric as a parameter by @NickCrews in #1137
Fix typo in AlignedUMAP documentation by @milesmcc in #1139
Add pre-release parameter in pipelines by @gclendenning in #1130
Update parametric_umap.py by @AMS-Hippo in #1147
Compile _optimize_layout_euclidean_single_epoch once by @kmkolasinski in #1152
Landmarked Re-Trainable Parametric UMAP by @jacobgolding in #1153
Small default functions for landmark-UMAP by @AMS-Hippo in #1156

New Contributors

@Slyderek made their first contribution in #1111
@IntelleKarl made their first contribution in #1129
@NickCrews made their first contribution in #1137
@milesmcc made their first contribution in #1139
@AMS-Hippo made their first contribution in #1147
@kmkolasinski made their first contribution in #1152
@jacobgolding made their first contribution in #1153

Full Changelog: release-0.5.6...release-0.5.7

Contributors

milesmcc, Slyderek, and 6 other contributors

Assets 2

03 Apr 15:21

lmcinnes

release-0.5.6

9e299eb

release-0.5.6

What's Changed

Setting random state could still lead to stochastic results by @dannywhuang in #1081
Change release tag structure and switch to real PyPI by @gclendenning in #1085
Add Keras 3 support to ParametricUMAP by @fchollet in #1101
Finish refactoring ParametricUMAP by @fchollet in #1105
Add torch support to ParametricUMAP by @fchollet in #1104
Bit hamming by @lmcinnes in #1107

New Contributors

@dannywhuang made their first contribution in #1081
@fchollet made their first contribution in #1101

Full Changelog: release-0.5.5...release-0.5.6

Contributors

fchollet, dannywhuang, and 2 other contributors

Assets 2

18 Nov 01:10

lmcinnes

release-0.5.5

32ed466

0.5.5 patch release

What's Changed

fix interactive plot if hover_data but no tools is provided by @timoleistner in #1058
Fixed bug causing digits data bokeh plot in tutorial to break by @Liqs-v2 in #1067
Make tbb requirement optional by @mithaler in #1066
Fix pkg_resources deprecation warning by @laclouis5 in #1072

New Contributors

@timoleistner made their first contribution in #1058
@Liqs-v2 made their first contribution in #1067
@mithaler made their first contribution in #1066
@laclouis5 made their first contribution in #1072

Full Changelog: 0.5.4...release-0.5.5

Contributors

mithaler, Liqs-v2, and 2 other contributors

Assets 2

15 Sep 15:26

lmcinnes

0.5.4

5f7512b

Patch release 0.5.4

What's Changed

Add numerically stable cross entropy loss by @jgraving in #856
Fix AlignedUMAP.update by @hndgzkn in #861
Fixed numerical issue in make_epochs_per_sample by @GregDemand in #875
Fix in1d() return type issue by @GregDemand in #877
Fix use of relation_dicts in expand_relations by @GregDemand in #880
Fix indexing issue with relations array by @GregDemand in #882
Added uniqueness flag to intersect1d by @SkBlaz in #896
Fix typos in docstrings by @sky-2002 in #903
consistency between install_requires and requirements.txt by @jlmelville in #908
Search index is optional for precomputed_knn by @jlmelville in #909
Fix doc build (a bit) by @jlmelville in #910
Fix the doc build by @jlmelville in #913
PCA initialization option by @jlmelville in #911
Allow points to be passed to umap.plot.points by @dribnet in #912
feature: add ability to specify tools to interactive charts so richer exploration with images and other content is possible by @suneeta-mall in #858
tighten test_umap_trustworthiness_random_init bound by @austereantelope in #850
tighten test_umap_sparse_trustworthiness bound by @austereantelope in #851
Get intermediate results at different epochs by @matthieuheitz in #696
Update penguins doc by @jlmelville in #914
ignore force approximation with precomputed knn by @jlmelville in #927
Update deprecated matplotlib colormap registry by @yannikschaelte in #929
Esm metagenomic atlas to Interactive Visualizations by @BioGeek in #936
get_feature_names_out for UMAP + tests by @CarloLepelaars in #939
Updated densMAP citation in README by @hhcho in #945
sklearn parwise distances doesn't support np.matrix anymore by @lmcinnes in #946
Minor performance improvements by @rohan-shah-nearmap in #948
Anticipate stricter asarray handling in numpy by @lmcinnes in #952
Aligned umap issues by @GregDemand in #958
Update densmap_demo.rst by @aizardar in #973
Allow UMAP to accept data with nan or inf values by @SamKlier in #977
new spectral initialization option: a truncated SVD-warmed lobpcg by @jlmelville in #924
fix: fix numpy.int and numpy.float deprecation to be compatible with numpy >= 1.20.0 by @TTTPOB in #1010
Docs | Add missing space in precomputed_k-nn.rst by @Odessit007 in #1014
Docs | Fix typo in supervised.rst by @Odessit007 in #1013
Update README.rst by @dsblank in #1016
Fix docstring formatting of init parameter of UMAP class by @felixdivo in #1019
Plotting Fix: fixing capitalization for Bokeh plotting for version 3.1.1 compatibility by @msakarvadia in #1023
Issue warning if setting n_jobs and random_state by @crypdick in #1002
docs : Fix formatting in UMAP class documentation by @Hamza-nabil in #992
docs: minor typos fix by @0xTiger in #983
[TYPO] Update precomputed_k-nn.rst by @cakiki in #922
Bug fix round pre0.5.4 by @lmcinnes in #1038
Fix unit tests by @hamelin in #1031
fix relations_dictionary problems which prevents from correctly updating aligned_umap by @hndgzkn in #863
Drop requirements.txt, embrace setup.py for deps by @hamelin in #1044
Fix unit tests involving spectral initialization by @hamelin in #1043
Drop dependency on TBB on non-Intel deployments by @hamelin in #1045
Add azure devops pipeline to push to PyPI by @gclendenning in #1053