Pinned Loading

1. cloning cloning Public

   Cloning algorithm for the computation of large deviation functions.

   C++

2. gLoop gLoop Public

   Software supporting M. Cavallaro, et al., 3′-5′ crosstalk contributes to transcriptional bursting. Genome Biol 22, 56 (2021). https://doi.org/10.1186/s13059-020-02227-5

   R 1

3. rancovr rancovr Public

   rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing

   R

4. dTASEP-fit dTASEP-fit Public

   Software supporting M. Cavallaro et al. "Bayesian inference of polymerase dynamics over the exclusion process" (2021) arXiv/2109.05100

   Python

5. Inverse-Laplace-transform Inverse-Laplace-transform Public

   C link to FORTRAN 77 routine 662 for the inversion of Laplace transforms

   Fortran 1 1

6. outbreak-detection outbreak-detection Public

   Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https…

   R