This repository contains:
-
c++ code used in reference [1] for the evaluation of the scaled cumulant generating functions (SCGFs) in:
- Non-Markovian TASEP (Totally Asymmetric Simple Exclusion Process)
\nonMarkovTASEP, - Semi-Markov model for ion-channel gating with direction-time independence (DTI)
\SemiMarkovDTI, - Semi-Markov model for ion-channel gating without DTI
\SemiMarkovNonDTI.
- Non-Markovian TASEP (Totally Asymmetric Simple Exclusion Process)
-
cloning.py, a Python implementation of the cloning algorithm for non-Markovian processes with heap sort, based on the examples at https://www.lpsm.paris//pageperso/lecomte/warwick-summer-school_2013.html. A basic Jupyter notebook demonstration (with Process-based parallelism) is here.
[1] Cavallaro, M., & Harris, R. J., A framework for the direct evaluation of large deviations in non-Markovian processes, Journal of Physics A: Mathematical and Theoretical, 49, 47LT02 (2016) 171–176 (ArXiv:1603.05634).