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ENCODE chromStates
Mikhail Dozmorov edited this page Aug 22, 2015
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4 revisions
| factor | factor_desc |
|---|---|
| 1ActivePromoter | Active Promoter |
| 2WeakPromoter | Weak Promoter |
| 3PoisedPromoter | Inactive-poised Promoter |
| 4StrongEnhancer | Strong enhancer |
| 5StrongEnhancer | Strong enhancer |
| 6WeakEnhancer | Weak-poised enhancer |
| 7WeakEnhancer | Weak-poised enhancer |
| 8Insulator | Insulator |
| 9TxnTransition | Transcriptional transition |
| 10TxnElongation | Transcriptional elongation |
| 11WeakTxn | Weak transcribed |
| 12Repressed | Polycomb-repressed |
| 13Heterochromlo | Heterochromatin, low signal |
| 14RepetitiveCNV | Repetitive-Copy Number Variation |
| 15RepetitiveCNV | Repetitive-Copy Number Variation |
| factor | factor_desc |
|---|---|
| Art | Heterochromatin-Repetitive-Copy Number Variation |
| Ctcf | Distal CTCF-Candidate Insulator |
| CtcfO | Distal CTCF-Candidate Insulator |
| DnaseD | Candidate Weak enhancer-DNase |
| DnaseU | Candidate Weak enhancer-DNase |
| Elon | Transcription associated |
| ElonW | Transcription associated |
| Enh | Candidate Strong enhancer |
| EnhF | Candidate Strong enhancer |
| EnhW | Candidate Weak enhancer-DNase |
| EnhWF | Candidate Weak enhancer-DNase |
| FaireW | Candidate Weak enhancer-DNase |
| Gen3 | Transcription associated |
| Gen5 | Transcription associated |
| H4K20 | Transcription associated |
| Low | Low activity proximal to active states |
| Pol2 | Transcription associated |
| PromF | Promoter Flanking |
| PromP | Inactive Promoter |
| Quies | Heterochromatin-Repetitive-Copy Number Variation |
| Repr | Polycob repressed |
| ReprD | Polycob repressed |
| ReprW | Polycob repressed |
| Tss | Active Promoter |
| TssF | Active Promoter |
| factor | factor_desc |
|---|---|
| CTCF | CTCF enriched element |
| E | Predicted enhancer |
| PF | Predicted promoter flanking region |
| R | Predicted Repressed or Low Activity region |
| T | Predicted transcribed region |
| TSS | Predicted promoter region including TSS |
| WE | Predicted promoter region including TSS |
| factor | factor_desc |
|---|---|
| Ctcf | CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances. |
| CtcfO | Distal CTCF-Candidate Insulator |
| DnaseD | DNase |
| Elon | Transcription associated |
| Elon1 | Transcription associated |
| Elon2 | Transcription associated |
| ElonW | Transcription associated |
| ElonW1 | Transcription associated |
| ElonW2 | Transcription associated |
| ElonW3 | Transcription associated |
| Enh | Candidate Strong enhancer |
| Enh1 | Candidate Strong enhancer |
| Enh2 | Candidate Strong enhancer |
| EnhF | Candidate Strong enhancer |
| EnhF1 | Candidate Strong enhancer |
| EnhF2 | Candidate Strong enhancer |
| EnhF3 | Candidate Strong enhancer |
| EnhP | Candidate Strong enhancer |
| EnhPr | Candidate Strong enhancer |
| EnhW | Candidate Weak enhancer |
| EnhW1 | Candidate Weak enhancer |
| EnhW2 | Candidate Weak enhancer |
| EnhWf | Candidate Weak enhancer |
| EnhWf1 | Candidate Weak enhancer |
| EnhWf2 | Candidate Weak enhancer |
| EnhWf3 | Candidate Weak enhancer |
| Faire | Candidate Weak enhancer-DNase |
| Gen3 | Transcription associated |
| Gen31 | Transcription associated |
| Gen32 | Transcription associated |
| Gen5 | Transcription associated |
| Gen51 | Transcription associated |
| Gen52 | Transcription associated |
| Low1 | Low activity proximal to active states |
| Low2 | Low activity proximal to active states |
| Low3 | Low activity proximal to active states |
| Low4 | Low activity proximal to active states |
| Low5 | Low activity proximal to active states |
| Low6 | Low activity proximal to active states |
| Low7 | Low activity proximal to active states |
| PromF | Promoter Flanking |
| PromP | Inactive Promoter |
| PromP1 | Inactive Promoter |
| PromP2 | Inactive Promoter |
| Quies | Heterochromatin-Repetitive-Copy Number Variation |
| Repr | Polycomb repressed |
| Repr1 | Polycomb repressed |
| Repr2 | Polycomb repressed |
| Repr3 | Polycomb repressed |
| Repr4 | Polycomb repressed |
| Repr5 | Polycomb repressed |
| Repr6 | Polycomb repressed |
| Repr7 | Polycomb repressed |
| Tss | Active Promoter |
| TssF | Active Promoter |