Added Figures

ncgr · Aug 6, 2024 · 6bce827 · 6bce827
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diff --git a/.DS_Store b/.DS_Store
diff --git a/Figures/.gitignore b/Figures/.gitignore
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+.DS_Store
diff --git a/Figures/Abstract1.png b/Figures/Abstract1.png
diff --git a/Figures/Abstract2.png b/Figures/Abstract2.png
diff --git a/Figures/Accessions.png b/Figures/Accessions.png
diff --git a/Figures/Anvio.png b/Figures/Anvio.png
diff --git a/Figures/BED.png b/Figures/BED.png
diff --git a/Figures/Bandage.png b/Figures/Bandage.png
diff --git a/Figures/Bandage2.png b/Figures/Bandage2.png
diff --git a/Figures/Bandage3.png b/Figures/Bandage3.png
diff --git a/Figures/Bandage4.png b/Figures/Bandage4.png
diff --git a/Figures/Bandage5.png b/Figures/Bandage5.png
diff --git a/Figures/Bio.png b/Figures/Bio.png
diff --git a/Figures/Cactus.png b/Figures/Cactus.png
diff --git a/Figures/ClosedvOpen.png b/Figures/ClosedvOpen.png
diff --git a/Figures/Computational.png b/Figures/Computational.png
diff --git a/Figures/CostGenome.png b/Figures/CostGenome.png
diff --git a/Figures/Cuttlefish.jpeg b/Figures/Cuttlefish.jpeg
diff --git a/Figures/Cuttlefish1v2.png b/Figures/Cuttlefish1v2.png
diff --git a/Figures/D614G.png b/Figures/D614G.png
diff --git a/Figures/DirectoryStructure.png b/Figures/DirectoryStructure.png
diff --git a/Figures/FRAlg.png b/Figures/FRAlg.png
diff --git a/Figures/Fig2.png b/Figures/Fig2.png
diff --git a/Figures/FinderWindow.png b/Figures/FinderWindow.png
diff --git a/Figures/Fork.png b/Figures/Fork.png
diff --git a/Figures/GFAFormat.png b/Figures/GFAFormat.png
diff --git a/Figures/GRAF.png b/Figures/GRAF.png
diff --git a/Figures/GRCh38.p13.png b/Figures/GRCh38.p13.png
diff --git a/Figures/GWAS.png b/Figures/GWAS.png
diff --git a/Figures/GenomePubs.png b/Figures/GenomePubs.png
diff --git a/Figures/GraphSpecific.png b/Figures/GraphSpecific.png
diff --git a/Figures/HumanPangenomePaper.png b/Figures/HumanPangenomePaper.png
diff --git a/Figures/INBRE_Logo_Grad_transparent-2019.png b/Figures/INBRE_Logo_Grad_transparent-2019.png
diff --git a/Figures/InputGenomes.png b/Figures/InputGenomes.png
diff --git a/Figures/Insertion.png b/Figures/Insertion.png
diff --git a/Figures/Inversions.png b/Figures/Inversions.png
diff --git a/Figures/Inversions1.png b/Figures/Inversions1.png
diff --git a/Figures/Inversionsx2.png b/Figures/Inversionsx2.png
diff --git a/Figures/JoannAlan.png b/Figures/JoannAlan.png
diff --git a/Figures/KMC3.png b/Figures/KMC3.png
diff --git a/Figures/KidsAndDog.png b/Figures/KidsAndDog.png
diff --git a/Figures/LPA.png b/Figures/LPA.png
diff --git a/Figures/LeedPeed.png b/Figures/LeedPeed.png
diff --git a/Figures/Links.png b/Figures/Links.png
diff --git a/Figures/Medicago.png b/Figures/Medicago.png
diff --git a/Figures/Medicago2.png b/Figures/Medicago2.png
diff --git a/Figures/MedicagoProteome.png b/Figures/MedicagoProteome.png
diff --git a/Figures/MicrobialSeqAlign.png b/Figures/MicrobialSeqAlign.png
diff --git a/Figures/Minigraph.png b/Figures/Minigraph.png
diff --git a/Figures/Orf1a.png b/Figures/Orf1a.png
diff --git a/Figures/PAF.png b/Figures/PAF.png
diff --git a/Figures/PAF2.png b/Figures/PAF2.png
diff --git a/Figures/PGV.png b/Figures/PGV.png
diff --git a/Figures/PGV2.png b/Figures/PGV2.png
diff --git a/Figures/PanXFig.png b/Figures/PanXFig.png
diff --git a/Figures/PanXFig2.png b/Figures/PanXFig2.png
diff --git a/Figures/Panache.png b/Figures/Panache.png
diff --git a/Figures/Pangenome.png b/Figures/Pangenome.png
diff --git a/Figures/PathSupport.png b/Figures/PathSupport.png
diff --git a/Figures/Phenotype.png b/Figures/Phenotype.png
diff --git a/Figures/RMSE.png b/Figures/RMSE.png
diff --git a/Figures/RMSE2.png b/Figures/RMSE2.png
diff --git a/Figures/ReadsToVariation.png b/Figures/ReadsToVariation.png
diff --git a/Figures/S288C.cup1.0.segs.png b/Figures/S288C.cup1.0.segs.png
diff --git a/Figures/S288C.cup1.10.segs.png b/Figures/S288C.cup1.10.segs.png
diff --git a/Figures/S288C.cup1.10.segs.zoom.png b/Figures/S288C.cup1.10.segs.zoom.png
diff --git a/Figures/S288C.png b/Figures/S288C.png
diff --git a/Figures/Screen.png b/Figures/Screen.png
diff --git a/Figures/SeqTube.png b/Figures/SeqTube.png
diff --git a/Figures/Shift.png b/Figures/Shift.png
diff --git a/Figures/Sigaux.png b/Figures/Sigaux.png
diff --git a/Figures/StructuralRearrangements.png b/Figures/StructuralRearrangements.png
diff --git a/Figures/Tettelin.png b/Figures/Tettelin.png
diff --git a/Figures/VGpipe.png b/Figures/VGpipe.png
diff --git a/Figures/VGref.png b/Figures/VGref.png
diff --git a/Figures/VariationGraphA.png b/Figures/VariationGraphA.png
diff --git a/Figures/VariationGraphB.png b/Figures/VariationGraphB.png
diff --git a/Figures/Vectorize1.png b/Figures/Vectorize1.png
diff --git a/Figures/Vectorize2.png b/Figures/Vectorize2.png
diff --git a/Figures/Virus.png b/Figures/Virus.png
diff --git a/Figures/YPRPBandage1.png b/Figures/YPRPBandage1.png
diff --git a/Figures/YPRPBandage2.png b/Figures/YPRPBandage2.png
diff --git a/Figures/YPRPBandage3.png b/Figures/YPRPBandage3.png
diff --git a/Figures/Yeast.png b/Figures/Yeast.png
diff --git a/Figures/YeastB.png b/Figures/YeastB.png
diff --git a/Figures/awk.png b/Figures/awk.png
diff --git a/Figures/cdbg.png b/Figures/cdbg.png
diff --git a/Figures/cup1.png b/Figures/cup1.png
diff --git a/Figures/cup1b.png b/Figures/cup1b.png
diff --git a/Figures/cup1new.png b/Figures/cup1new.png
diff --git a/Figures/diversity.png b/Figures/diversity.png
diff --git a/Figures/etohTolerance.png b/Figures/etohTolerance.png
diff --git a/Figures/fig-2-full.png b/Figures/fig-2-full.png
diff --git a/Figures/graphcompare.png b/Figures/graphcompare.png
diff --git a/Figures/hairballsB.png b/Figures/hairballsB.png
diff --git a/Figures/haplotype.png b/Figures/haplotype.png
diff --git a/Figures/hla_genes.png b/Figures/hla_genes.png
diff --git a/Figures/hla_haplotypes.png b/Figures/hla_haplotypes.png
diff --git a/Figures/inv.png b/Figures/inv.png
diff --git a/Figures/inv2.png b/Figures/inv2.png
diff --git a/Figures/limitations.png b/Figures/limitations.png
diff --git a/Figures/lpa_bandage.png b/Figures/lpa_bandage.png
diff --git a/Figures/lpa_bandage_2.png b/Figures/lpa_bandage_2.png
diff --git a/Figures/lpa_gene_structure.png b/Figures/lpa_gene_structure.png
diff --git a/Figures/momig1.png b/Figures/momig1.png
diff --git a/Figures/momig2.png b/Figures/momig2.png
diff --git a/Figures/morevariation.png b/Figures/morevariation.png
diff --git a/Figures/morevariation2.png b/Figures/morevariation2.png
diff --git a/Figures/ncgr.png b/Figures/ncgr.png
diff --git a/Figures/panGraphViewer.jpeg b/Figures/panGraphViewer.jpeg
diff --git a/Figures/pggbFlowDiagram.png b/Figures/pggbFlowDiagram.png
diff --git a/Figures/rGFA1.png b/Figures/rGFA1.png
diff --git a/Figures/rGFA2.png b/Figures/rGFA2.png
diff --git a/Figures/rh_genes.png b/Figures/rh_genes.png
diff --git a/Figures/rh_haplotypes.png b/Figures/rh_haplotypes.png
diff --git a/Figures/sv.inversions.png b/Figures/sv.inversions.png