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Update 02-building-graphs-with-pggb.ipynb
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Removed some errant commas in the bgzip section
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joannmudge authored Oct 18, 2024
1 parent aad1252 commit fbdca37
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4 changes: 2 additions & 2 deletions module_notebooks/02-building-graphs-with-pggb.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -252,7 +252,7 @@
"6. Compress the FASTA files\n",
"\n",
"We will compress the files with bgzip. It is similar to gzip but allows for much faster random access though it creates bigger files than gzip.\n"
"[bgzip](https://www.htslib.org/doc/bgzip.html) the FASTA files (~1min):\n",
"[bgzip](https://www.htslib.org/doc/bgzip.html) the FASTA files (~1min):\n"
]
},
{
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"outputs": [],
"source": [
"bgzip -c yprp.all.fa > yprp.all.fa.gz\n",
"bgzip -c yprp.chrVIII.fa > yprp.chrVIII.fa.gz\n",
"bgzip -c yprp.chrVIII.fa > yprp.chrVIII.fa.gz\n"
]
}
{
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